Guide to the Human Genome
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Name: WDR59 Sequence: fasta or formatted (974aa) NCBI GI: 58331266
Description:

WD repeat domain 59

Referenced in:

WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         63           2
 C cysteine            3.1         30           1
 D aspartate           5.5         54           2
 E glutamate           5.3         52           3
 F phenylalanine       3.9         38           1
 G glycine             5.4         53           2
 H histidine           3.4         33           1
 I isoleucine          3.5         34           2
 K lysine              5.0         49           2
 L leucine             9.0         88           3
 M methionine          1.5         15           2
 N asparagine          4.0         39           2
 P proline             5.7         56           2
 Q glutamine           4.7         46           2
 R arginine            6.5         63           2
 S serine              9.4         92           2
 T threonine           5.7         56           2
 V valine              6.7         65           3
 W tryptophan          2.3         22           1
 Y tyrosine            2.7         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 59 
GRWD1                 0.024   glutamate-rich WD repeat containing 1 
WDR24                 0.024   WD repeat domain 24 
PEX7                  0.024   peroxisomal biogenesis factor 7 
RBBP4                 0.024   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.024   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.024   retinoblastoma binding protein 4 isoform a 
WDR5                  0.022   WD repeat domain 5 
WDR5                  0.022   WD repeat domain 5 
PRPF4                 0.021   PRP4 pre-mRNA processing factor 4 homolog 
WDR5B                 0.021   WD repeat domain 5B 
RBBP7                 0.020   retinoblastoma binding protein 7 
SEC31B                0.020   SEC31 homolog B 
TSSC1                 0.020   tumor suppressing subtransferable candidate 1 
KATNB1                0.019   katanin p80 subunit B 1 
SEC31A                0.018   SEC31 homolog A isoform 3 
SEC31A                0.018   SEC31 homolog A isoform 1 
SEC31A                0.018   SEC31 homolog A isoform 4 
SEC31A                0.018   SEC31 homolog A isoform 2 
SEC31A                0.018   SEC31 homolog A isoform 1 
NLE1                  0.017   Notchless gene homolog isoform b 
NLE1                  0.017   Notchless gene homolog isoform a 
SNRNP40               0.016   WD repeat domain 57 (U5 snRNP specific) 
FZR1                  0.016   Fzr1 protein isoform 1 
FZR1                  0.016   Fzr1 protein isoform 3 
FZR1                  0.016   Fzr1 protein isoform 2 
WDR33                 0.016   WD repeat domain 33 isoform 1 
WDR69                 0.015   WD repeat domain 69 
CIAO1                 0.015   WD repeat domain 39 
TBL1Y                 0.015   transducin beta-like 1Y 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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