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Search of human proteins with 23510437
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23510437 tumor necrosis factor receptor superfamily, member
8 isoform 2 [Homo sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23510437 tumor necrosis factor receptor superfamily, member 8... 270 2e-73
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 270 2e-73
gi|30089948 protein phosphatase 1E [Homo sapiens] 34 0.029
gi|45387958 1A6/DRIM (down-regulated in metastasis) interacting ... 34 0.038
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 32 0.19
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 31 0.25
gi|156105681 presenilin 2 isoform 2 [Homo sapiens] 31 0.25
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 30 0.42
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 30 0.42
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 30 0.42
gi|45827729 scribble isoform b [Homo sapiens] 30 0.42
gi|45827731 scribble isoform a [Homo sapiens] 30 0.42
gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens] 30 0.55
gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens] 30 0.55
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 30 0.72
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 30 0.72
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 30 0.72
gi|148727335 patatin-like phospholipase domain containing 7 isof... 30 0.72
gi|148727290 patatin-like phospholipase domain containing 7 isof... 30 0.72
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 30 0.72
gi|158341646 hypothetical protein LOC729830 [Homo sapiens] 30 0.72
gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 29 0.94
gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 29 0.94
gi|150170722 G protein-coupled receptor 50 [Homo sapiens] 29 0.94
gi|171906567 peripheral benzodiazepine receptor-associated prote... 29 0.94
gi|171906559 peripheral benzodiazepine receptor-associated prote... 29 0.94
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 29 1.2
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 29 1.2
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 29 1.2
gi|33356148 formin-like 1 [Homo sapiens] 29 1.2
>gi|23510437 tumor necrosis factor receptor superfamily, member 8
isoform 2 [Homo sapiens]
Length = 132
Score = 270 bits (691), Expect = 2e-73
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MSQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKAD 60
MSQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKAD
Sbjct: 1 MSQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKAD 60
Query: 61 TVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEG 120
TVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEG
Sbjct: 61 TVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEG 120
Query: 121 KEDPLPTAASGK 132
KEDPLPTAASGK
Sbjct: 121 KEDPLPTAASGK 132
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 270 bits (691), Expect = 2e-73
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MSQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKAD 60
MSQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKAD
Sbjct: 464 MSQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKAD 523
Query: 61 TVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEG 120
TVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEG
Sbjct: 524 TVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEG 583
Query: 121 KEDPLPTAASGK 132
KEDPLPTAASGK
Sbjct: 584 KEDPLPTAASGK 595
>gi|30089948 protein phosphatase 1E [Homo sapiens]
Length = 755
Score = 34.3 bits (77), Expect = 0.029
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 71 LPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEGKE 122
L E RG G EPE E E E + P E E EP L SVEE G+E
Sbjct: 19 LGEFRGPCGGGEPEPEPEPEPEPEPE-SEPEPEPELVEAEAAEASVEEPGEE 69
>gi|45387958 1A6/DRIM (down-regulated in metastasis) interacting
protein [Homo sapiens]
Length = 1209
Score = 33.9 bits (76), Expect = 0.038
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 11 SVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKA-DTVIVGTVKA 69
S A+ P + PA P S D S + +I K KA ++V V+A
Sbjct: 801 SASASEGNPFPRESQGPAPSPGSLSDDSSSVDSNDSIELEIRKFLAEKAKESVSSSEVQA 860
Query: 70 ELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCS 110
E P G GPA PE+ +E PP G C+
Sbjct: 861 EGPTALGTGGPARPEV-----------LCRKEPAPPPGVCT 890
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 31.6 bits (70), Expect = 0.19
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 10 HSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMK--ADTVIVGTV 67
HS + E+ P+ SPA SP LP P T+ + KI + + A + G
Sbjct: 1627 HSQPEGWAEATPVNGHSPALQSQSPVQLPSPAC----TSTQWPKIKVTRGPATATLAGLE 1682
Query: 68 KAELPEGRGLA-GPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEGKEDPLP 126
+ R A GP+ PEL+ + P PE E+EP G D + ++ D P
Sbjct: 1683 QTGPLGSRSTAKGPSLPELQFQ------PEEPE-ESEPSRG--QDPLTDQKQADSADKRP 1733
Query: 127 TAASGK 132
A GK
Sbjct: 1734 --AEGK 1737
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 31.2 bits (69), Expect = 0.25
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 70 ELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCS-DVMLSVEEEG----KEDP 124
E EG G A EP+ + E E + P EQ PP G+ D + EG P
Sbjct: 1342 EATEGPGSADTEEPKSQGEAEREEVPRPAEQTEPPPSGTPGPDDARDDDHEGGPVEGPGP 1401
Query: 125 LPTAAS 130
LP+ AS
Sbjct: 1402 LPSPAS 1407
>gi|156105681 presenilin 2 isoform 2 [Homo sapiens]
Length = 447
Score = 31.2 bits (69), Expect = 0.25
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 64 VGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEE 119
VG K + L P +PE+E+ ++ P YPE EPPL L EEE
Sbjct: 302 VGMAKLDPSSQGALQLPYDPEMEDSYDSFGEPSYPE-VFEPPLTGYPGEELEEEEE 356
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 30.4 bits (67), Expect = 0.42
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 2 SQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKADT 61
+ P +TC AA +P + P+ P+ L E + + +E + +
Sbjct: 1344 ASPCFQTCRDPRAASCRDVPRVEGCVPVCPT-PQVLDEVTQRCVYLEDCVEPAVWVPTEA 1402
Query: 62 VIVGTVKAELPEGRGLAGPAEPELEEELEADHTP-HYPEQETEPPLGSCSDVMLSVEEEG 120
+ T LP +GL P++ E + E+ TP H P PL + + ++ EE
Sbjct: 1403 LGNET----LPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTTALNPPVTATEEP 1458
Query: 121 KEDPLPT 127
P PT
Sbjct: 1459 VVSPGPT 1465
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 30.4 bits (67), Expect = 0.42
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 2 SQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKADT 61
+ P +TC AA +P + P+ P+ L E + + +E + +
Sbjct: 1344 ASPCFQTCRDPRAASCRDVPRVEGCVPVCPT-PQVLDEVTQRCVYLEDCVEPAVWVPTEA 1402
Query: 62 VIVGTVKAELPEGRGLAGPAEPELEEELEADHTP-HYPEQETEPPLGSCSDVMLSVEEEG 120
+ T LP +GL P++ E + E+ TP H P PL + + ++ EE
Sbjct: 1403 LGNET----LPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTTALNPPVTATEEP 1458
Query: 121 KEDPLPT 127
P PT
Sbjct: 1459 VVSPGPT 1465
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 30.4 bits (67), Expect = 0.42
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 2 SQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKADT 61
+ P +TC AA +P + P+ P+ L E + + +E + +
Sbjct: 1344 ASPCFQTCRDPRAASCRDVPRVEGCVPVCPT-PQVLDEVTQRCVYLEDCVEPAVWVPTEA 1402
Query: 62 VIVGTVKAELPEGRGLAGPAEPELEEELEADHTP-HYPEQETEPPLGSCSDVMLSVEEEG 120
+ T LP +GL P++ E + E+ TP H P PL + + ++ EE
Sbjct: 1403 LGNET----LPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTTALNPPVTATEEP 1458
Query: 121 KEDPLPT 127
P PT
Sbjct: 1459 VVSPGPT 1465
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 30.4 bits (67), Expect = 0.42
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 19/121 (15%)
Query: 29 GGPSSPRDLPEPRV-----STEHTNNKIEKIYIMKADTVIVGTVKAELPEGRGLAGPA-- 81
G P +P LP R T H KI + +V ++ P+G G P
Sbjct: 587 GQPEAPWTLPGGRQRLIRKDTPHYKKHF-KISKLPQPEAVVALLQGMQPDGEGPVAPGGW 645
Query: 82 ----------EPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEGKEDPLPTAASG 131
+ EEE E + +P E+E E + S EEE KE + +A S
Sbjct: 646 HNGPHAPWAPRAQKEEEEEEEGSPQEEEEEEEEE-NRAEEEEASTEEEDKEGAVVSAPSV 704
Query: 132 K 132
K
Sbjct: 705 K 705
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 30.4 bits (67), Expect = 0.42
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 19/121 (15%)
Query: 29 GGPSSPRDLPEPRV-----STEHTNNKIEKIYIMKADTVIVGTVKAELPEGRGLAGPA-- 81
G P +P LP R T H KI + +V ++ P+G G P
Sbjct: 587 GQPEAPWTLPGGRQRLIRKDTPHYKKHF-KISKLPQPEAVVALLQGMQPDGEGPVAPGGW 645
Query: 82 ----------EPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEGKEDPLPTAASG 131
+ EEE E + +P E+E E + S EEE KE + +A S
Sbjct: 646 HNGPHAPWAPRAQKEEEEEEEGSPQEEEEEEEEE-NRAEEEEASTEEEDKEGAVVSAPSV 704
Query: 132 K 132
K
Sbjct: 705 K 705
>gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens]
Length = 710
Score = 30.0 bits (66), Expect = 0.55
Identities = 31/122 (25%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 5 LMETCHSVGAAYLESLPLQDASPAG----------GPSSPRDLPEPRVSTEHTNNKIEKI 54
L+E H G A E+ Q+A P GPS P P P V+ +
Sbjct: 78 LLEVPH--GGAAAEAAGSQEAEPGSRVNLASRPEQGPSGPAAPPGPGVAPAGAVTISSQD 135
Query: 55 YIMKADTVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVML 114
+++ D G + P G AG A P + TP Y E + L L
Sbjct: 136 LLVRLDR---GVLALSAPPGPATAGAAAPRRAPQASGPSTPGYRCPEPQCALAFAKKHQL 192
Query: 115 SV 116
V
Sbjct: 193 KV 194
>gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens]
Length = 858
Score = 30.0 bits (66), Expect = 0.55
Identities = 31/122 (25%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 5 LMETCHSVGAAYLESLPLQDASPAG----------GPSSPRDLPEPRVSTEHTNNKIEKI 54
L+E H G A E+ Q+A P GPS P P P V+ +
Sbjct: 78 LLEVPH--GGAAAEAAGSQEAEPGSRVNLASRPEQGPSGPAAPPGPGVAPAGAVTISSQD 135
Query: 55 YIMKADTVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVML 114
+++ D G + P G AG A P + TP Y E + L L
Sbjct: 136 LLVRLDR---GVLALSAPPGPATAGAAAPRRAPQASGPSTPGYRCPEPQCALAFAKKHQL 192
Query: 115 SV 116
V
Sbjct: 193 KV 194
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 29.6 bits (65), Expect = 0.72
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 10/129 (7%)
Query: 2 SQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIE-KIYIMKAD 60
+ P +TC AA +P G S P P+V E T + + + A
Sbjct: 1416 ASPCFQTCRDPRAASCRDVPR-------GRSCVPVCPTPQVLDEVTQRCVYLEDCVEPAV 1468
Query: 61 TVIVGTVKAE-LPEGRGLAGPAEPELEEELEADHTP-HYPEQETEPPLGSCSDVMLSVEE 118
V + E LP +GL P++ E + E+ TP H P PL + + ++ E
Sbjct: 1469 WVPTEALGNETLPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTTALNPPVTATE 1528
Query: 119 EGKEDPLPT 127
E P PT
Sbjct: 1529 EPVVSPGPT 1537
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 29.6 bits (65), Expect = 0.72
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 10/129 (7%)
Query: 2 SQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIE-KIYIMKAD 60
+ P +TC AA +P G S P P+V E T + + + A
Sbjct: 1416 ASPCFQTCRDPRAASCRDVPR-------GRSCVPVCPTPQVLDEVTQRCVYLEDCVEPAV 1468
Query: 61 TVIVGTVKAE-LPEGRGLAGPAEPELEEELEADHTP-HYPEQETEPPLGSCSDVMLSVEE 118
V + E LP +GL P++ E + E+ TP H P PL + + ++ E
Sbjct: 1469 WVPTEALGNETLPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTTALNPPVTATE 1528
Query: 119 EGKEDPLPT 127
E P PT
Sbjct: 1529 EPVVSPGPT 1537
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 29.6 bits (65), Expect = 0.72
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 10/129 (7%)
Query: 2 SQPLMETCHSVGAAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIE-KIYIMKAD 60
+ P +TC AA +P G S P P+V E T + + + A
Sbjct: 1416 ASPCFQTCRDPRAASCRDVPR-------GRSCVPVCPTPQVLDEVTQRCVYLEDCVEPAV 1468
Query: 61 TVIVGTVKAE-LPEGRGLAGPAEPELEEELEADHTP-HYPEQETEPPLGSCSDVMLSVEE 118
V + E LP +GL P++ E + E+ TP H P PL + + ++ E
Sbjct: 1469 WVPTEALGNETLPPSQGLPTPSDEEPQLSQESPRTPTHRPALTPAAPLTTALNPPVTATE 1528
Query: 119 EGKEDPLPT 127
E P PT
Sbjct: 1529 EPVVSPGPT 1537
>gi|148727335 patatin-like phospholipase domain containing 7 isoform
a [Homo sapiens]
Length = 1342
Score = 29.6 bits (65), Expect = 0.72
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 42 VSTEHTNNKIEKIYIMKADTVIVGTVKAELPEGRGLAGPAEPELEEELEADH-------- 93
++TE N + + I ++ +V G K ++ G P L+E ++DH
Sbjct: 312 LTTELFNAESQAIPLVSVASVAAGKAKKQVFYGEEERLKKPPRLQESCDSDHGGGRPAAA 371
Query: 94 TPHYPEQETEPPLGSCSDVMLSVEEEGKEDPLPTAASG 131
P + P ++ +E+ G DP P+A G
Sbjct: 372 GPLLKRSHSVPAPSIRKQILEELEKPGAGDPDPSAPQG 409
>gi|148727290 patatin-like phospholipase domain containing 7 isoform
b [Homo sapiens]
Length = 1317
Score = 29.6 bits (65), Expect = 0.72
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 42 VSTEHTNNKIEKIYIMKADTVIVGTVKAELPEGRGLAGPAEPELEEELEADH-------- 93
++TE N + + I ++ +V G K ++ G P L+E ++DH
Sbjct: 287 LTTELFNAESQAIPLVSVASVAAGKAKKQVFYGEEERLKKPPRLQESCDSDHGGGRPAAA 346
Query: 94 TPHYPEQETEPPLGSCSDVMLSVEEEGKEDPLPTAASG 131
P + P ++ +E+ G DP P+A G
Sbjct: 347 GPLLKRSHSVPAPSIRKQILEELEKPGAGDPDPSAPQG 384
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 29.6 bits (65), Expect = 0.72
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 18/131 (13%)
Query: 18 ESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKADTVIVG-TVKAELPEGRG 76
E P + S + PS+P+ LPEP S ++ + E + + + ++ E
Sbjct: 438 EQTPEKPPSSSAPPSAPQSLPEPVASAHSSSAESESTSDSDSSSDSESESSSSDSEENEP 497
Query: 77 LAGPA---EPELEEELEADH---------TPHYPEQETEPP-----LGSCSDVMLSVEEE 119
L PA EP + + D+ P + TEPP SD S E
Sbjct: 498 LETPAPEPEPPTTNKWQLDNWLTKVSQPAAPPEGPRSTEPPRRHPESKGSSDSATSQEHS 557
Query: 120 GKEDPLPTAAS 130
+DP P ++S
Sbjct: 558 ESKDPPPKSSS 568
>gi|158341646 hypothetical protein LOC729830 [Homo sapiens]
Length = 1040
Score = 29.6 bits (65), Expect = 0.72
Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 29/106 (27%)
Query: 21 PLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKADTVIVGTVKAELPEGRGLAGP 80
P Q+ P P S +L P EH++N + A PE L
Sbjct: 712 PKQEREPEAAPESNSELASPAPEAEHSSN-----------------LTAAHPESEELIAQ 754
Query: 81 AE---PELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEGKED 123
+ EL+ E +YP T PL +L+ EEEGKE+
Sbjct: 755 YDQIIKELDSGAEGLMEQNYP---TPDPL------LLTKEEEGKEE 791
>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
Length = 1668
Score = 29.3 bits (64), Expect = 0.94
Identities = 31/131 (23%), Positives = 44/131 (33%), Gaps = 21/131 (16%)
Query: 14 AAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTN-----------------NKIEKIYI 56
AA +P P PS+ + LP P TE NK
Sbjct: 1141 AAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEEDPAMKPQSVLTRVKMFENKRSASLE 1200
Query: 57 MKADTVIVGTVK----AELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDV 112
K D G+ K A P G + GP + E D T + + +P L D+
Sbjct: 1201 TKKDVNDTGSFKPPEVASKPSGAPIIGPKPTSQNQFSEHDKTLYRIPEPQKPQLKPPEDI 1260
Query: 113 MLSVEEEGKED 123
+ S + +ED
Sbjct: 1261 VRSNHYDPEED 1271
>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
Length = 1748
Score = 29.3 bits (64), Expect = 0.94
Identities = 31/131 (23%), Positives = 44/131 (33%), Gaps = 21/131 (16%)
Query: 14 AAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTN-----------------NKIEKIYI 56
AA +P P PS+ + LP P TE NK
Sbjct: 1221 AAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEEDPAMKPQSVLTRVKMFENKRSASLE 1280
Query: 57 MKADTVIVGTVK----AELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDV 112
K D G+ K A P G + GP + E D T + + +P L D+
Sbjct: 1281 TKKDVNDTGSFKPPEVASKPSGAPIIGPKPTSQNQFSEHDKTLYRIPEPQKPQLKPPEDI 1340
Query: 113 MLSVEEEGKED 123
+ S + +ED
Sbjct: 1341 VRSNHYDPEED 1351
>gi|150170722 G protein-coupled receptor 50 [Homo sapiens]
Length = 617
Score = 29.3 bits (64), Expect = 0.94
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 20 LPLQDASPAGGPSSP----------RDLPEPRVSTEHTNNKIEKIYI 56
LP +SPA GP+ P DLP+P V T TN+ + + I
Sbjct: 560 LPESASSPAAGPTKPAASQLESDTIADLPDPTVVTTSTNDYHDVVVI 606
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 29.3 bits (64), Expect = 0.94
Identities = 33/130 (25%), Positives = 43/130 (33%), Gaps = 27/130 (20%)
Query: 2 SQPLMETCHSVGAAYLESLPLQDASPA-GGPSSPRDLPEPRVSTEHTNNKIEKIYIMKAD 60
S P +C S + PL ASP G PSSP P P + E
Sbjct: 1022 SLPARVSCPSPHPSPEARAPLASASPGPGDPSSPLQHPAPLGTQE--------------- 1066
Query: 61 TVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEG 120
P G A P+ + E P E+ LG+ + S G
Sbjct: 1067 -----------PPGAPPASPSREMAKGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLG 1115
Query: 121 KEDPLPTAAS 130
++DP P A S
Sbjct: 1116 EKDPGPAAPS 1125
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 29.3 bits (64), Expect = 0.94
Identities = 33/130 (25%), Positives = 43/130 (33%), Gaps = 27/130 (20%)
Query: 2 SQPLMETCHSVGAAYLESLPLQDASPA-GGPSSPRDLPEPRVSTEHTNNKIEKIYIMKAD 60
S P +C S + PL ASP G PSSP P P + E
Sbjct: 1082 SLPARVSCPSPHPSPEARAPLASASPGPGDPSSPLQHPAPLGTQE--------------- 1126
Query: 61 TVIVGTVKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEG 120
P G A P+ + E P E+ LG+ + S G
Sbjct: 1127 -----------PPGAPPASPSREMAKGSHEDPPAPCSQEEAGAAVLGTSEERTASTSTLG 1175
Query: 121 KEDPLPTAAS 130
++DP P A S
Sbjct: 1176 EKDPGPAAPS 1185
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 17 LESLPLQDASPAGGPSS----PRDLPEPRVSTEHTNNKIEKIYIMKADTVIVGTVKAELP 72
L PL P P + P P +++ ++++ ++ T ++ +VK +
Sbjct: 894 LTQTPLLPQPPMAQPPQVLLEDEEPPAPPLTSMQMQLYLQQLQKVQPPTPLLPSVKVQSQ 953
Query: 73 EGRGLAGPAEPELEEELEADHTPHYPEQETEPP 105
L P P ++++L+ P P Q PP
Sbjct: 954 PPPPLPPPPHPSVQQQLQQQPPPPPPPQPQPPP 986
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 28.9 bits (63), Expect = 1.2
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 14 AAYLESLPLQDASPAGGP---SSPRDLPE-PRVSTEHTNNKIEKIYIMKA---DTVIVGT 66
AAY + L ++ GP S P LP+ P VST EKI +++ +TVIV
Sbjct: 400 AAYRKLLEGEECRIGFGPIPFSLPEGLPKIPSVSTHIKVKSEEKIKVVEKSEKETVIV-- 457
Query: 67 VKAELPEGRGLAGPAEPELEEELEADHTPHYPEQETEPPLGSCSDVMLSVEEEGKEDPLP 126
E E E ++ EE+ + E+E + G + EEE K P
Sbjct: 458 --EEQTE--------ETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAE 507
Query: 127 TAAS 130
AAS
Sbjct: 508 EAAS 511
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 28.9 bits (63), Expect = 1.2
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 73 EGRGLAGPAEPELEEELEADHTPHYPEQETE---PPLGSC-SDVMLSVEEEGKE----DP 124
+G+ + GP+ P+L E PH E +E PPL + S+ ++ +EE E P
Sbjct: 836 DGKEVIGPSSPDLVVASEHSFPPHTTEMTSECQAPPLSATPSEYVVLSDEEAVELERYTP 895
Query: 125 LPTAAS 130
T+AS
Sbjct: 896 SSTSAS 901
Score = 26.2 bits (56), Expect = 8.0
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 46 HTNNKIEKIYIMKADTVIV------GTVKAELPEGRGLAGPAEPELEEELEAD------H 93
H+ + E + + KA+T + K +LP R P E+++++
Sbjct: 2011 HSLMESESLLLEKANTELSWPSKEDSQEKIKLPPERFFQKPVSGLSVEQVKSETISSSVK 2070
Query: 94 TPHYPEQETEPPLGSCSDVMLSVEEEGKEDPL 125
T H+P + EP LG+ + S +E PL
Sbjct: 2071 TAHFPAEGVEPALGNEKEAHRSTPPFPEEKPL 2102
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 28.9 bits (63), Expect = 1.2
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 14 AAYLESLPLQDASPAGGPSSPRDLPEPRVSTEHTNNKIEKIYIMKADTVIVGTVKAELPE 73
A +E LP+ A+P+GG D P P V T + + A G P
Sbjct: 498 AVSIEILPVAVATPSGG-----DAPTPGVPTGSPSPD-----LAPAAEPAPGAAPPPPPP 547
Query: 74 GRGLAGPAEPELEEELEADHTPHYPEQETEPPL 106
GL P E +A P PE PPL
Sbjct: 548 LPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPL 580
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,894,193
Number of Sequences: 37866
Number of extensions: 373928
Number of successful extensions: 1224
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 122
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.