Guide to the Human Genome
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Name: GPR50 Sequence: fasta or formatted (617aa) NCBI GI: 150170722
Description:

G protein-coupled receptor 50

Referenced in:

G-Protein-coupled Receptors
Serotonin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         64           3
 C cysteine            2.4         15           1
 D aspartate           4.5         28           2
 E glutamate           3.1         19           2
 F phenylalanine       4.2         26           2
 G glycine             4.4         27           2
 H histidine           4.9         30           2
 I isoleucine          7.0         43           2
 K lysine              4.2         26           2
 L leucine             6.6         41           2
 M methionine          2.6         16           1
 N asparagine          4.1         25           2
 P proline             8.8         54           2
 Q glutamine           1.8         11           1
 R arginine            3.6         22           2
 S serine              8.6         53           3
 T threonine           6.0         37           2
 V valine              8.4         52           3
 W tryptophan          1.0          6           1
 Y tyrosine            3.6         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G protein-coupled receptor 50 
MTNR1A                0.259   melatonin receptor 1A 
MTNR1B                0.247   melatonin receptor 1B 
NPFFR1                0.080   neuropeptide FF receptor 1 
OPRM1                 0.080   opioid receptor, mu 1 isoform MOR-1H 
OPRM1                 0.080   opioid receptor, mu 1 isoform MOR-1 
OPRM1                 0.080   opioid receptor, mu 1 isoform MOR-1B5 
OPRM1                 0.080   opioid receptor, mu 1 isoform MOR-1B2 
OPRM1                 0.080   opioid receptor, mu 1 isoform MOR-1B3 
OPRM1                 0.080   opioid receptor, mu 1 isoform MOR-1B1 
OPRM1                 0.080   opioid receptor, mu 1 isoform MOR-1A 
OPRM1                 0.080   opioid receptor, mu 1 isoform MOR-1B4 
OPRM1                 0.080   opioid receptor, mu 1 isoform MOR-1O 
OPRM1                 0.080   opioid receptor, mu 1 isoform MOR-1X 
NPFFR2                0.077   neuropeptide FF receptor 2 isoform 2 
NPFFR2                0.077   neuropeptide FF receptor 2 isoform 1 
NPFFR2                0.077   neuropeptide FF receptor 2 isoform 3 
TACR1                 0.077   tachykinin receptor 1 isoform long 
NPY1R                 0.077   neuropeptide Y receptor Y1 
TACR1                 0.074   tachykinin receptor 1 isoform short 
QRFPR                 0.073   G protein-coupled receptor 103 
NPY2R                 0.073   neuropeptide Y receptor Y2 
PRLHR                 0.070   G protein-coupled receptor 10 
GALR1                 0.070   galanin receptor 1 
OPRM1                 0.069   opioid receptor, mu 1 isoform MOR-1G2 
SSTR5                 0.068   somatostatin receptor 5 
OPRM1                 0.068   opioid receptor, mu 1 isoform MOR-1G1 
OPRM1                 0.068   opioid receptor, mu 1 isoform MOR1-K1 
GPR83                 0.066   G protein-coupled receptor 83 
SSTR4                 0.066   somatostatin receptor 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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