Guide to the Human Genome
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Name: KIAA0649 Sequence: fasta or formatted (1209aa) NCBI GI: 45387958
Description:

1A6/DRIM (down-regulated in metastasis) interacting protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5        127           2
 C cysteine            1.6         19           1
 D aspartate           6.1         74           2
 E glutamate           6.6         80           3
 F phenylalanine       2.6         32           1
 G glycine            10.3        125           3
 H histidine           1.9         23           1
 I isoleucine          1.5         18           1
 K lysine              6.1         74           3
 L leucine             7.2         87           2
 M methionine          1.0         12           1
 N asparagine          1.1         13           1
 P proline             8.9        107           3
 Q glutamine           4.7         57           1
 R arginine            7.8         94           3
 S serine             12.3        149           3
 T threonine           4.3         52           3
 V valine              4.5         54           2
 W tryptophan          0.6          7           1
 Y tyrosine            0.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   1A6/DRIM (down-regulated in metastasis) interacting ... 
TCOF1                 0.016   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.016   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.015   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.015   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.015   Treacher Collins-Franceschetti syndrome 1 isoform a ...
NOLC1                 0.015   nucleolar and coiled-body phosphoprotein 1 
TCOF1                 0.015   Treacher Collins-Franceschetti syndrome 1 isoform c ...
SRRM2                 0.013   splicing coactivator subunit SRm300 
SRRM1                 0.013   serine/arginine repetitive matrix 1 
APC2                  0.012   adenomatosis polyposis coli 2 
NUP214                0.011   nucleoporin 214kDa 
LOC100292370          0.010   PREDICTED: hypothetical protein 
NEFH                  0.010   neurofilament, heavy polypeptide 200kDa 
MARCKS                0.010   myristoylated alanine-rich protein kinase C substra...
NIPBL                 0.009   delangin isoform B 
NIPBL                 0.009   delangin isoform A 
NACA                  0.009   nascent polypeptide-associated complex alpha subuni...
SCAF1                 0.009   SR-related CTD-associated factor 1 
MAST4                 0.009   microtubule associated serine/threonine kinase fami...
FNDC1                 0.009   fibronectin type III domain containing 1 
TRIO                  0.009   triple functional domain (PTPRF interacting) 
ZC3H18                0.009   zinc finger CCCH-type containing 18 
GPRIN1                0.008   G protein-regulated inducer of neurite outgrowth 1 ...
BSN                   0.008   bassoon protein 
COL5A2                0.008   alpha 2 type V collagen preproprotein 
CELSR2                0.008   cadherin EGF LAG seven-pass G-type receptor 2 
COL2A1                0.008   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.008   collagen, type II, alpha 1 isoform 2 precursor [Hom...
CROCC                 0.008   ciliary rootlet coiled-coil 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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