Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PNPLA7 Sequence: fasta or formatted (1317aa) NCBI GI: 148727290
Description:

patatin-like phospholipase domain containing 7 isoform b

Referenced in:

Neurons

Other entries for this name:
alt prot [1342aa] patatin-like phospholipase domain containing 7 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0        106           3
 C cysteine            1.6         21           2
 D aspartate           5.6         74           2
 E glutamate           6.1         80           3
 F phenylalanine       3.1         41           1
 G glycine             7.0         92           4
 H histidine           2.7         35           1
 I isoleucine          4.3         56           2
 K lysine              4.9         65           2
 L leucine            11.2        148           3
 M methionine          2.3         30           1
 N asparagine          1.6         21           2
 P proline             5.4         71           3
 Q glutamine           4.3         57           2
 R arginine            6.9         91           2
 S serine              7.8        103           2
 T threonine           5.2         68           2
 V valine              8.4        110           3
 W tryptophan          1.1         15           2
 Y tyrosine            2.5         33           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   patatin-like phospholipase domain containing 7 isof... 
PNPLA7                0.995   patatin-like phospholipase domain containing 7 isof...
PNPLA6                0.589   patatin-like phospholipase domain containing 6 [Hom...
PRKAR1B               0.012   protein kinase, cAMP-dependent, regulatory, type I, ...
PRKAR1A               0.011   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.011   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.011   cAMP-dependent protein kinase, regulatory subunit alp...
PRKAR2A               0.009   cAMP-dependent protein kinase, regulatory subunit alp...
PRKAR2B               0.007   cAMP-dependent protein kinase, regulatory subunit be...
THRAP3                0.005   thyroid hormone receptor associated protein 3 [Homo...
RAPGEF3               0.005   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.005   Rap guanine nucleotide exchange factor 3 isoform b [...
RAPGEF3               0.005   Rap guanine nucleotide exchange factor 3 isoform a ...
SLC9A10               0.004   sperm-specific sodium proton exchanger 
PRKG1                 0.004   protein kinase, cGMP-dependent, type I isoform 1 [H...
KIAA0649              0.004   1A6/DRIM (down-regulated in metastasis) interacting ...
PRKG1                 0.004   protein kinase, cGMP-dependent, type I isoform 2 [Ho...
RAPGEF4               0.004   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF4               0.004   Rap guanine nucleotide exchange factor (GEF) 4 isof...
HCN3                  0.004   hyperpolarization activated cyclic nucleotide-gated ...
NACAD                 0.003   NAC alpha domain containing 
NACAD                 0.003   PREDICTED: NAC alpha domain containing 
NACAD                 0.003   PREDICTED: NAC alpha domain containing 
NACAD                 0.003   PREDICTED: NAC alpha domain containing 
NACAD                 0.003   PREDICTED: NAC alpha domain containing 
ASXL1                 0.003   additional sex combs like 1 
KIAA0754              0.003   hypothetical protein LOC643314 
LOC100291533          0.003   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.003   PREDICTED: hypothetical protein XP_002342946 
SNIP                  0.003   SNAP25-interacting protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press