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Search of human proteins with 23503313
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23503313 LysM, putative peptidoglycan-binding, domain
containing 2 isoform 1 [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23503313 LysM, putative peptidoglycan-binding, domain contain... 422 e-118
gi|221139701 LysM, putative peptidoglycan-binding, domain contai... 247 6e-66
gi|47086487 LysM, putative peptidoglycan-binding, domain contain... 119 3e-27
gi|211938454 LysM, putative peptidoglycan-binding, domain contai... 80 1e-15
gi|84370276 LysM, putative peptidoglycan-binding, domain contain... 40 0.001
gi|194306543 oxidation resistance 1 isoform 2 [Homo sapiens] 37 0.013
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 36 0.028
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 36 0.028
gi|194306541 oxidation resistance 1 isoform 1 [Homo sapiens] 34 0.082
gi|22218341 matrix metalloproteinase 21 preproprotein [Homo sapi... 34 0.11
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 33 0.18
gi|118918413 MICAL C-terminal like [Homo sapiens] 33 0.18
gi|26051271 voltage-gated potassium channel, subfamily H, member... 33 0.24
gi|4557729 voltage-gated potassium channel, subfamily H, member ... 33 0.24
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 33 0.24
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 33 0.24
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 33 0.24
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 32 0.31
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 32 0.31
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 32 0.41
gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens] 32 0.41
gi|158303333 synaptopodin isoform B [Homo sapiens] 32 0.41
gi|150417973 supervillin isoform 2 [Homo sapiens] 32 0.53
gi|150417971 supervillin isoform 1 [Homo sapiens] 32 0.53
gi|124248554 melanoma antigen family A, 9 -like [Homo sapiens] 32 0.53
gi|4885473 melanoma antigen family A, 9 [Homo sapiens] 32 0.53
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 32 0.53
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 32 0.53
gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo sapi... 32 0.53
gi|170932524 nuclear receptor coactivator 7 isoform 1 [Homo sapi... 32 0.53
>gi|23503313 LysM, putative peptidoglycan-binding, domain containing
2 isoform 1 [Homo sapiens]
Length = 215
Score = 422 bits (1084), Expect = e-118
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MADSSPALSLREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASVRA 60
MADSSPALSLREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASVRA
Sbjct: 1 MADSSPALSLREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASVRA 60
Query: 61 PLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISE 120
PLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISE
Sbjct: 61 PLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISE 120
Query: 121 KPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFL 180
KPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFL
Sbjct: 121 KPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFL 180
Query: 181 QRLDLQIKLSTQAAKKLKEESRDEESPYATSLYHS 215
QRLDLQIKLSTQAAKKLKEESRDEESPYATSLYHS
Sbjct: 181 QRLDLQIKLSTQAAKKLKEESRDEESPYATSLYHS 215
>gi|221139701 LysM, putative peptidoglycan-binding, domain
containing 2 isoform 2 [Homo sapiens]
Length = 124
Score = 247 bits (630), Expect = 6e-66
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 92 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVV 151
MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVV
Sbjct: 1 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVV 60
Query: 152 AGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATS 211
AGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATS
Sbjct: 61 AGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEESRDEESPYATS 120
Query: 212 LYHS 215
LYHS
Sbjct: 121 LYHS 124
>gi|47086487 LysM, putative peptidoglycan-binding, domain containing
1 isoform a [Homo sapiens]
Length = 227
Score = 119 bits (297), Expect = 3e-27
Identities = 76/170 (44%), Positives = 101/170 (59%), Gaps = 21/170 (12%)
Query: 44 LARTKTRSYGSTASVRAPLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFT 103
L ++ RSYGS + V ER +EH++ GDTL G+ALKYGVTMEQIKRAN+L+T
Sbjct: 16 LQGSRARSYGSLVQSAC---SPVRERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYT 72
Query: 104 NDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEP-------------V 150
ND IFLKKTL IP+++E LFNGL+S + + E + + E P
Sbjct: 73 NDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHSTERKKQETGAGR 132
Query: 151 VAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQ-AAKKLKE 199
GE LP P + P ++SA DFL++LD QI LS + AA+KLK+
Sbjct: 133 ANGEVLPTPGQE----TPTPIHDLSASDFLKKLDSQISLSKKAAAQKLKK 178
>gi|211938454 LysM, putative peptidoglycan-binding, domain
containing 1 isoform b [Homo sapiens]
Length = 179
Score = 80.5 bits (197), Expect = 1e-15
Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 18/122 (14%)
Query: 92 MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEP-- 149
MEQIKRAN+L+TND IFLKKTL IP+++E LFNGL+S + + E + + E P
Sbjct: 13 MEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEEKDGEEKVHPSNSEVWPHS 72
Query: 150 -----------VVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQ-AAKKL 197
GE LP P + P ++SA DFL++LD QI LS + AA+KL
Sbjct: 73 TERKKQETGAGRANGEVLPTPGQE----TPTPIHDLSASDFLKKLDSQISLSKKAAAQKL 128
Query: 198 KE 199
K+
Sbjct: 129 KK 130
>gi|84370276 LysM, putative peptidoglycan-binding, domain containing
3 [Homo sapiens]
Length = 306
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 23/130 (17%)
Query: 75 VRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSP 134
++ GDTL IAL+Y T+ IKR N L ++ F +++ IPV F+ L P
Sbjct: 69 IQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKK-----FSSLTETLCP 123
Query: 135 E--NETADNS---FSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKL 189
+T+ +S +S E++ ++ D S SD SA FL+ +D I+
Sbjct: 124 PKGRQTSRHSSVQYSSEQQEILPAND----SLAYSD---------SAGSFLKEVDRDIEQ 170
Query: 190 STQAAKKLKE 199
+ +E
Sbjct: 171 IVKCTDNKRE 180
>gi|194306543 oxidation resistance 1 isoform 2 [Homo sapiens]
Length = 839
Score = 37.0 bits (84), Expect = 0.013
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 19 RPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASVRAPLGAGVIERHVEHRVRAG 78
RP APS P +G + +T + G S + P G +E+ V +
Sbjct: 56 RPPAPSSPEGPDTGQK-----------KTLDKKDGRRMSFQKPKGT------IEYTVESR 98
Query: 79 DTLQGIALKYGVTMEQIKRANKLFT 103
D+L IALK+ T ++ + NKLF+
Sbjct: 99 DSLNSIALKFDTTPNELVQLNKLFS 123
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 35.8 bits (81), Expect = 0.028
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 116 PVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQ-PVQPEEV 174
P++ PLL G + E+ T D S + + EPV PPSP +D + + P +
Sbjct: 116 PLLRPSPLLATGQPA--GSEDLTKDRSLTGKLEPV------SPPSPPHTDPELELVPPRL 167
Query: 175 SARDFLQ---RLDLQIKLSTQAAKKLKEESRDEESPYA 209
S + +Q R+D +I + Q KLK++ + E A
Sbjct: 168 SKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 205
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 35.8 bits (81), Expect = 0.028
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 116 PVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQ-PVQPEEV 174
P++ PLL G + E+ T D S + + EPV PPSP +D + + P +
Sbjct: 116 PLLRPSPLLATGQPA--GSEDLTKDRSLTGKLEPV------SPPSPPHTDPELELVPPRL 167
Query: 175 SARDFLQ---RLDLQIKLSTQAAKKLKEESRDEESPYA 209
S + +Q R+D +I + Q KLK++ + E A
Sbjct: 168 SKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 205
>gi|194306541 oxidation resistance 1 isoform 1 [Homo sapiens]
Length = 846
Score = 34.3 bits (77), Expect = 0.082
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 20/103 (19%)
Query: 15 PRAPRPSAPSPP--------PRSRSGSESEEAEL----SLSLARTKT--RSYGSTASVRA 60
P+A +P AP P + S +EL ++ + KT + G S +
Sbjct: 34 PQASKPPAPKTPIIEEEQNNAANTQKHPSRRSELKRFYTIDTGQKKTLDKKDGRRMSFQK 93
Query: 61 PLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFT 103
P G +E+ V + D+L IALK+ T ++ + NKLF+
Sbjct: 94 PKGT------IEYTVESRDSLNSIALKFDTTPNELVQLNKLFS 130
>gi|22218341 matrix metalloproteinase 21 preproprotein [Homo
sapiens]
Length = 569
Score = 33.9 bits (76), Expect = 0.11
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 10 LREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASVRA 60
+R P AP PS P PPPR+RS S A LSLS + R Y + +A
Sbjct: 122 MRPPPPSAP-PSPPGPPPRARS-RRSPRAPLSLSRRGWQPRGYPDGGAAQA 170
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 33.1 bits (74), Expect = 0.18
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 28/152 (18%)
Query: 31 SGSESEEAELSLSLARTKTRSYGSTASVRA---PLGAGVIERHVEHRVRAGDTLQGIALK 87
S + EE+ L ++ T G TA+V A LG + E + + R+G +
Sbjct: 1115 SSDDEEESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQ-RSGRQI------ 1167
Query: 88 YGVTMEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEE 147
+ Q+K A + D K+ +N S+KP FN SP+ S +
Sbjct: 1168 ----LSQLKEATQSHQVD----KQGVN----SQKPCFFNSYYIGKSPKK------ISSPK 1209
Query: 148 EPVVAGEDLPPPSPQESDVQPVQPEEVSARDF 179
+ V + +PPPSP+ S + P + A F
Sbjct: 1210 KVVTSPRKVPPPSPKSSGPKRALPPKTLANYF 1241
Score = 28.5 bits (62), Expect = 4.5
Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 19/113 (16%)
Query: 110 KKTLNIPVISEKPLLFNGLNSIDSPENETA-----DNSFSQEEEPVVA------GEDLPP 158
KKT IP I K F NS+ PENE N QEEE +A E + P
Sbjct: 334 KKTGKIPRIFLKQKQFEMENSLSDPENEQTVQKRKSNVVIQEEELELAVLEAGSSEAVKP 393
Query: 159 PSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEE-----SRDEES 206
E Q ++ A D L+ +K S+ K L E+ RD+ S
Sbjct: 394 KCTLEERQQFMKAFRQPASDALKN---GVKKSSDKQKDLNEKCLYEVGRDDNS 443
>gi|118918413 MICAL C-terminal like [Homo sapiens]
Length = 695
Score = 33.1 bits (74), Expect = 0.18
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 9 SLREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTAS 57
SLR+ P P P P PPP + G++S+ L + + + +++S
Sbjct: 451 SLRQAAPPPPPPPPPPPPPPTAGGADSKNFPLRAQVTEASSSASSTSSS 499
>gi|26051271 voltage-gated potassium channel, subfamily H, member 2
isoform b [Homo sapiens]
Length = 888
Score = 32.7 bits (73), Expect = 0.24
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 14 GPRAPRPSAPSPPPRSRSGSESEEAE-LSLSLARTKTRSYGSTASVRAPLGAGVIE 68
GP +P SAP P R+ S + +A S SLART++R S ASVR A IE
Sbjct: 236 GPGSPPRSAPGQLPSPRAHSLNPDASGSSCSLARTRSRE--SCASVRRASSADDIE 289
>gi|4557729 voltage-gated potassium channel, subfamily H, member 2
isoform a [Homo sapiens]
Length = 1159
Score = 32.7 bits (73), Expect = 0.24
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 14 GPRAPRPSAPSPPPRSRSGSESEEAE-LSLSLARTKTRSYGSTASVRAPLGAGVIE 68
GP +P SAP P R+ S + +A S SLART++R S ASVR A IE
Sbjct: 236 GPGSPPRSAPGQLPSPRAHSLNPDASGSSCSLARTRSRE--SCASVRRASSADDIE 289
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 32.7 bits (73), Expect = 0.24
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 76 RAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPE 135
R ++G+ALK+G ++ Q ++ D + ++PV P + +PE
Sbjct: 890 RGEKEMEGVALKHGPSLPQERKQAPSTRRDSAEPSSSRSVPVAHPGPP--PASSQTPAPE 947
Query: 136 NETADNSFSQEEEPVVAGE---DLPPPSPQESDVQPVQPEEVSAR 177
++ A N ++P +A + PP SP +P E +S R
Sbjct: 948 HDKAANKMPLAQKPALAPKPTSQTPPASPLSKLSRPYLVELLSRR 992
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 32.7 bits (73), Expect = 0.24
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 89 GVTMEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEE 148
G EQ NKL + C LK+ N+P ++ G+ + + + E + + +
Sbjct: 500 GAFGEQFDAKNKLTCSIC--LKEFKNLPALNGHMRSHGGMRASPNLKQEEGEKVLPPQPQ 557
Query: 149 PVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKL 189
P + PPP PQ + PE S + + + +KL
Sbjct: 558 PPLPPPPPPPPPPQ------LPPEAESLTPMVMPVSVPVKL 592
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 32.7 bits (73), Expect = 0.24
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 15 PRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASVRAPLGAGVIE--RHVE 72
P P+P P+P + + S + S S +RT + S +S R+ G G RH
Sbjct: 357 PAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHAR 416
Query: 73 HRVRAGDTLQGIALKYGVTMEQIKR 97
R R+ + + +Y + + +R
Sbjct: 417 SRSRSWSRSRSRSRRYSRSRSRGRR 441
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 32.3 bits (72), Expect = 0.31
Identities = 52/212 (24%), Positives = 81/212 (38%), Gaps = 26/212 (12%)
Query: 4 SSPALSLREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRS-YGSTASVRAPL 62
SSP LS R R+P PS S RSRS + S + R+ +RS + S + VR PL
Sbjct: 333 SSPFLSKRSLS-RSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSISPVRLPL 391
Query: 63 GAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISEKP 122
+ + G L + K K +FL + N V ++
Sbjct: 392 NSSL-----------GAELSRKKKERAAAAAAAKMDGKESKGSPVFLPRKENSSVEAKD- 439
Query: 123 LLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQR 182
+GL S P + + S E +V L SD V+ +E S + ++
Sbjct: 440 ---SGLESKKLPRSVKLEKSAPDTE--LVNVTHLNTEVKNSSDTGKVKLDENSEKHLVKD 494
Query: 183 LDLQ-------IKLSTQAAKKLKEESRDEESP 207
L Q I L + + E+ ++E+P
Sbjct: 495 LKAQGTRDSKPIALKEEIVTPKETETSEKETP 526
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 32.3 bits (72), Expect = 0.31
Identities = 52/212 (24%), Positives = 81/212 (38%), Gaps = 26/212 (12%)
Query: 4 SSPALSLREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRS-YGSTASVRAPL 62
SSP LS R R+P PS S RSRS + S + R+ +RS + S + VR PL
Sbjct: 333 SSPFLSKRSLS-RSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSISPVRLPL 391
Query: 63 GAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISEKP 122
+ + G L + K K +FL + N V ++
Sbjct: 392 NSSL-----------GAELSRKKKERAAAAAAAKMDGKESKGSPVFLPRKENSSVEAKD- 439
Query: 123 LLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQR 182
+GL S P + + S E +V L SD V+ +E S + ++
Sbjct: 440 ---SGLESKKLPRSVKLEKSAPDTE--LVNVTHLNTEVKNSSDTGKVKLDENSEKHLVKD 494
Query: 183 LDLQ-------IKLSTQAAKKLKEESRDEESP 207
L Q I L + + E+ ++E+P
Sbjct: 495 LKAQGTRDSKPIALKEEIVTPKETETSEKETP 526
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 32.0 bits (71), Expect = 0.41
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 131 IDSPENETAD-NSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFL--QRLDLQI 187
+ S ++E + + S E PVVA D P +P+++D Q S + RL +
Sbjct: 515 LPSEDDEAEELKALSPAESPVVAWSD--PTTPKDTDGQDRAASTASTNSAIINDRLQELV 572
Query: 188 KLSTQAAKKLKEE------SRDEESP 207
KL + +K+KE+ + DEESP
Sbjct: 573 KLFKERTEKVKEKLIDPDVTSDEESP 598
Score = 27.7 bits (60), Expect = 7.7
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 148 EPVVAGEDLPPP----------SPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKL 197
EP + E++ PP SPQ ++V P EE A + + R +I+ + ++
Sbjct: 301 EPDLVLEEVEPPWEDAHQDVSTSPQGTEVVPAYEEENKAVEKMPRELSRIEEEKEDEEEE 360
Query: 198 KEESRDEESPYATSL 212
+EE +EE T +
Sbjct: 361 EEEEEEEEEEEVTEV 375
>gi|14589866 aspartate beta-hydroxylase isoform a [Homo sapiens]
Length = 758
Score = 32.0 bits (71), Expect = 0.41
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 134 PENETADNSFSQEEE----PVVAGEDLPPPSPQESDVQPVQPEEVSARD--FLQRLDLQI 187
PE+ ++S EE PV +++PP + +++D P Q +V + L + D I
Sbjct: 283 PEDNPVEDSQVIVEEVSIFPVEEQQEVPPETNRKTD-DPEQKAKVKKKKPKLLNKFDKTI 341
Query: 188 KLSTQAAKKLKEESRDEES 206
K AA+KL++ + EE+
Sbjct: 342 KAELDAAEKLRKRGKIEEA 360
>gi|158303333 synaptopodin isoform B [Homo sapiens]
Length = 685
Score = 32.0 bits (71), Expect = 0.41
Identities = 59/243 (24%), Positives = 89/243 (36%), Gaps = 48/243 (19%)
Query: 3 DSSPALSLREGGPRAPRPSAPSPPPRS-----------------RSGSESEEAE------ 39
+ SP L R G +AP P PS P RS G S +E
Sbjct: 255 ERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSPMVERRMMGQRSPASERRPLGN 314
Query: 40 LSLSLARTKTRSYGSTAS-VRAPLGAGVIERHVEHRVRAGDTLQGIAL---KYGVTMEQI 95
+ T+T S AS VR+P V+ + + L+G A+ K G+ E +
Sbjct: 315 FTAPPTYTETLSTAPLASWVRSPPSYSVLYPSSDPK---SSHLKGQAVPASKTGILEESM 371
Query: 96 KR---ANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVA 152
R +FT F++K P ++ P L + + + D + EEEP
Sbjct: 372 ARRGSRKSMFT----FVEK----PKVTPNPDLLDLVQTADEKRRQRDQGEVGVEEEPFAL 423
Query: 153 GEDL----PPPSPQESDVQPVQPEEVSAR--DFLQRLDLQIKLSTQAAKKLKEESRDEES 206
G + P+P++ P EEV L+ +Q K + + L E S
Sbjct: 424 GAEASNFQQEPAPRDR-ASPAAAEEVVPEWASCLKSPRIQAKPKPKPNQNLSEASGKGAE 482
Query: 207 PYA 209
YA
Sbjct: 483 LYA 485
>gi|150417973 supervillin isoform 2 [Homo sapiens]
Length = 2214
Score = 31.6 bits (70), Expect = 0.53
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 10 LREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASV----RAPLGAG 65
L E PR R S P+ P RS +EE E S S +TRS T + +P G+G
Sbjct: 35 LEEDTPRYMRASDPASPHIGRS---NEEEETSDSSLEKQTRSKYCTETSGVHGDSPYGSG 91
Query: 66 VIERH-VEHRVR-----AGDTLQGIALKYGVTME 93
++ H +E + + + +A KYG+T++
Sbjct: 92 TMDTHSLESKAERIARYKAERRRQLAEKYGLTLD 125
>gi|150417971 supervillin isoform 1 [Homo sapiens]
Length = 1788
Score = 31.6 bits (70), Expect = 0.53
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 10 LREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASV----RAPLGAG 65
L E PR R S P+ P RS +EE E S S +TRS T + +P G+G
Sbjct: 35 LEEDTPRYMRASDPASPHIGRS---NEEEETSDSSLEKQTRSKYCTETSGVHGDSPYGSG 91
Query: 66 VIERH-VEHRVR-----AGDTLQGIALKYGVTME 93
++ H +E + + + +A KYG+T++
Sbjct: 92 TMDTHSLESKAERIARYKAERRRQLAEKYGLTLD 125
>gi|124248554 melanoma antigen family A, 9 -like [Homo sapiens]
Length = 315
Score = 31.6 bits (70), Expect = 0.53
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 135 ENETADNSFSQEEEPVVAGEDLPPPSPQ 162
E ET +S S+EEE AG PP SPQ
Sbjct: 35 EEETTSSSDSKEEEVSAAGSSSPPQSPQ 62
>gi|4885473 melanoma antigen family A, 9 [Homo sapiens]
Length = 315
Score = 31.6 bits (70), Expect = 0.53
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 135 ENETADNSFSQEEEPVVAGEDLPPPSPQ 162
E ET +S S+EEE AG PP SPQ
Sbjct: 35 EEETTSSSDSKEEEVSAAGSSSPPQSPQ 62
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 31.6 bits (70), Expect = 0.53
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 9 SLREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASVRAPLGAGVIE 68
SL GGP APR +AP PP + +G A +S +A++++++ A+ A G
Sbjct: 32 SLPAGGP-APRRTAPPPPGHASAG----PAAMSSHIAKSESKTSLLKAAAAAASGGSRAP 86
Query: 69 RH 70
RH
Sbjct: 87 RH 88
Score = 28.5 bits (62), Expect = 4.5
Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 11 REGGPRA---PRPSAPSPPPRSRSGSESEEAELSLSLA-RTKTRSYGSTASVRA 60
RE P A P PS+P PP R R G EE LS +L R R+ G SV A
Sbjct: 146 REALPAAASRPSPSSPLPPARGRDG---EERGLSPALGLRGSLRARGRGDSVPA 196
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 31.6 bits (70), Expect = 0.53
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 2 ADSSPALSLREGG-------PRAPRPSAPSPPPRSRSGSESEEAELSLSLARTK 48
A SSPALSL P P P P PP S SG ++E+ +TK
Sbjct: 3097 ATSSPALSLSSAPTKPLLQTPPPPPPPPPPPPSSSLSGQQTEQQNKESEKKQTK 3150
>gi|170932526 nuclear receptor coactivator 7 isoform 2 [Homo
sapiens]
Length = 931
Score = 31.6 bits (70), Expect = 0.53
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 71 VEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCI 107
+E+ DTL IALK+ +T ++ NKLFT+ +
Sbjct: 114 MEYTAGNQDTLNSIALKFNITPNKLVELNKLFTHTIV 150
>gi|170932524 nuclear receptor coactivator 7 isoform 1 [Homo
sapiens]
Length = 942
Score = 31.6 bits (70), Expect = 0.53
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 71 VEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCI 107
+E+ DTL IALK+ +T ++ NKLFT+ +
Sbjct: 114 MEYTAGNQDTLNSIALKFNITPNKLVELNKLFTHTIV 150
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,408,114
Number of Sequences: 37866
Number of extensions: 490209
Number of successful extensions: 5246
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 4854
Number of HSP's gapped (non-prelim): 504
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.