TRERF1 6439

Name: TRERF1	Sequence: fasta or formatted (1200aa)		NCBI GI: 15812226
Description: transcriptional regulating factor 1		Referenced in: Zinc Finger Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.1 73 2 C cysteine 1.1 13 2 D aspartate 4.1 49 3 E glutamate 5.6 67 6 F phenylalanine 2.0 24 2 G glycine 7.1 85 3 H histidine 3.8 46 1 I isoleucine 2.7 32 2 K lysine 4.5 54 3 L leucine 9.2 111 3 M methionine 3.1 37 2 N asparagine 3.1 37 2 P proline 11.8 142 10 Q glutamine 11.2 134 5 R arginine 3.8 45 1 S serine 8.0 96 2 T threonine 4.8 57 2 V valine 4.8 58 2 W tryptophan 0.6 7 1 Y tyrosine 2.8 33 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 transcriptional regulating factor 1 C14orf43 0.124 hypothetical protein LOC91748 C14orf43 0.124 hypothetical protein LOC91748 ZNF541 0.111 zinc finger protein 541 MED15 0.025 mediator complex subunit 15 isoform b ZFHX3 0.025 AT-binding transcription factor 1 MLL2 0.025 myeloid/lymphoid or mixed-lineage leukemia 2 MED15 0.024 mediator complex subunit 15 isoform a ZNF853 0.022 zinc finger protein 853 PAXIP1 0.021 PAX interacting protein 1 FLJ22184 0.021 PREDICTED: hypothetical protein FLJ22184 MAML2 0.020 mastermind-like 2 MED12 0.020 mediator complex subunit 12 NCOA6 0.018 nuclear receptor coactivator 6 ZFHX4 0.018 zinc finger homeodomain 4 ARID1A 0.018 AT rich interactive domain 1A isoform a ARID1A 0.018 AT rich interactive domain 1A isoform b FOXP2 0.017 forkhead box P2 isoform I PCLO 0.017 piccolo isoform 2 PCLO 0.017 piccolo isoform 1 CIZ1 0.016 CDKN1A interacting zinc finger protein 1 isoform 3 ... CIZ1 0.016 CDKN1A interacting zinc finger protein 1 isoform 2 ... WIPF3 0.016 WAS/WASL interacting protein family, member 3 [Homo... MIER3 0.016 mesoderm induction early response 1, family member 3... RCOR1 0.016 REST corepressor 1 RCOR3 0.016 REST corepressor 3 isoform c RCOR3 0.016 REST corepressor 3 isoform a RCOR3 0.016 REST corepressor 3 isoform d RCOR3 0.016 REST corepressor 3 isoform b FOXP2 0.016 forkhead box P2 isoform II Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.