Guide to the Human Genome
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Name: TRERF1 Sequence: fasta or formatted (1200aa) NCBI GI: 15812226
Description:

transcriptional regulating factor 1

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         73           2
 C cysteine            1.1         13           2
 D aspartate           4.1         49           3
 E glutamate           5.6         67           6
 F phenylalanine       2.0         24           2
 G glycine             7.1         85           3
 H histidine           3.8         46           1
 I isoleucine          2.7         32           2
 K lysine              4.5         54           3
 L leucine             9.2        111           3
 M methionine          3.1         37           2
 N asparagine          3.1         37           2
 P proline            11.8        142          10
 Q glutamine          11.2        134           5
 R arginine            3.8         45           1
 S serine              8.0         96           2
 T threonine           4.8         57           2
 V valine              4.8         58           2
 W tryptophan          0.6          7           1
 Y tyrosine            2.8         33           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcriptional regulating factor 1 
C14orf43              0.124   hypothetical protein LOC91748 
C14orf43              0.124   hypothetical protein LOC91748 
ZNF541                0.111   zinc finger protein 541 
MED15                 0.025   mediator complex subunit 15 isoform b 
ZFHX3                 0.025   AT-binding transcription factor 1 
MLL2                  0.025   myeloid/lymphoid or mixed-lineage leukemia 2 
MED15                 0.024   mediator complex subunit 15 isoform a 
ZNF853                0.022   zinc finger protein 853 
PAXIP1                0.021   PAX interacting protein 1 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
MAML2                 0.020   mastermind-like 2 
MED12                 0.020   mediator complex subunit 12 
NCOA6                 0.018   nuclear receptor coactivator 6 
ZFHX4                 0.018   zinc finger homeodomain 4 
ARID1A                0.018   AT rich interactive domain 1A isoform a 
ARID1A                0.018   AT rich interactive domain 1A isoform b 
FOXP2                 0.017   forkhead box P2 isoform I 
PCLO                  0.017   piccolo isoform 2 
PCLO                  0.017   piccolo isoform 1 
CIZ1                  0.016   CDKN1A interacting zinc finger protein 1 isoform 3 ...
CIZ1                  0.016   CDKN1A interacting zinc finger protein 1 isoform 2 ...
WIPF3                 0.016   WAS/WASL interacting protein family, member 3 [Homo...
MIER3                 0.016   mesoderm induction early response 1, family member 3...
RCOR1                 0.016   REST corepressor 1 
RCOR3                 0.016   REST corepressor 3 isoform c 
RCOR3                 0.016   REST corepressor 3 isoform a 
RCOR3                 0.016   REST corepressor 3 isoform d 
RCOR3                 0.016   REST corepressor 3 isoform b 
FOXP2                 0.016   forkhead box P2 isoform II 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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