LYSMD1 30406

Name: LYSMD1	Sequence: fasta or formatted (227aa)		NCBI GI: 47086487
Description: LysM, putative peptidoglycan-binding, domain containing 1 isoform a		Not currently referenced in the text
Other entries for this name: alt prot {179aa} LysM, putative peptidoglycan-binding, domain containing 1 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.2 14 3 C cysteine 0.4 1 1 D aspartate 4.8 11 1 E glutamate 8.4 19 3 F phenylalanine 1.8 4 1 G glycine 8.4 19 2 H histidine 2.2 5 1 I isoleucine 3.1 7 1 K lysine 7.0 16 2 L leucine 11.5 26 2 M methionine 1.3 3 1 N asparagine 2.6 6 1 P proline 7.9 18 3 Q glutamine 5.3 12 2 R arginine 7.0 16 2 S serine 9.3 21 2 T threonine 6.2 14 1 V valine 4.0 9 1 W tryptophan 0.9 2 1 Y tyrosine 1.8 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 LysM, putative peptidoglycan-binding, domain contain... LYSMD1 0.724 LysM, putative peptidoglycan-binding, domain contai... LYSMD2 0.218 LysM, putative peptidoglycan-binding, domain contain... LYSMD2 0.128 LysM, putative peptidoglycan-binding, domain contai... LYSMD3 0.035 LysM, putative peptidoglycan-binding, domain contain... WDR62 0.019 WD repeat domain 62 isoform 1 WDR62 0.019 WD repeat domain 62 isoform 2 SENP1 0.019 sentrin/SUMO-specific protease 1 ZNF692 0.019 zinc finger protein 692 isoform 2 ZNF692 0.019 zinc finger protein 692 isoform 1 BMP6 0.016 bone morphogenetic protein 6 preproprotein OXR1 0.016 oxidation resistance 1 isoform 2 OXR1 0.016 oxidation resistance 1 isoform 1 FAM71B 0.016 family with sequence similarity 71, member B MYBBP1A 0.016 MYB binding protein 1a isoform 1 MYBBP1A 0.016 MYB binding protein 1a isoform 2 RBM27 0.014 RNA binding motif protein 27 FAT1 0.012 FAT tumor suppressor 1 precursor NCOA7 0.012 nuclear receptor coactivator 7 isoform 2 NCOA7 0.012 nuclear receptor coactivator 7 isoform 1 ATF1 0.012 activating transcription factor 1 HIVEP2 0.012 human immunodeficiency virus type I enhancer bindin... YTHDC1 0.012 splicing factor YT521-B isoform 2 LRCH4 0.012 leucine-rich repeats and calponin homology (CH) doma... YTHDC1 0.012 splicing factor YT521-B isoform 1 MYST4 0.012 MYST histone acetyltransferase (monocytic leukemia)... CWC15 0.009 CWC15 homolog RP1L1 0.009 retinitis pigmentosa 1-like 1 WDR87 0.009 NYD-SP11 protein KIAA1671 0.009 hypothetical protein LOC85379 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.