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Search of human proteins with 23312392
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23312392 tigger transposable element derived 2 [Homo
sapiens]
(525 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23312392 tigger transposable element derived 2 [Homo sapiens] 1055 0.0
gi|22547224 jerky homolog-like [Homo sapiens] 674 0.0
gi|117938293 jerky isoform a [Homo sapiens] 291 1e-78
gi|117938295 jerky isoform b [Homo sapiens] 289 4e-78
gi|22325392 tigger transposable element derived 7 [Homo sapiens] 236 3e-62
gi|22209001 hypothetical protein LOC200765 [Homo sapiens] 220 2e-57
gi|22219477 tigger transposable element derived 4 [Homo sapiens] 164 2e-40
gi|13569924 hypothetical protein LOC81789 [Homo sapiens] 164 2e-40
gi|144922631 tigger transposable element derived 5 [Homo sapiens] 160 3e-39
gi|21735415 centromere protein B [Homo sapiens] 136 4e-32
gi|239755627 PREDICTED: similar to cag [Homo sapiens] 124 2e-28
gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo ... 124 2e-28
gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo ... 124 2e-28
gi|23312394 tigger transposable element derived 3 [Homo sapiens] 101 1e-21
gi|49619234 hypothetical protein LOC92806 [Homo sapiens] 62 1e-09
gi|46397390 pogo transposable element with ZNF domain isoform 1 ... 44 3e-04
gi|46397394 pogo transposable element with ZNF domain isoform 2 ... 44 3e-04
gi|117938307 doublecortin domain containing 2 [Homo sapiens] 38 0.026
gi|239756639 PREDICTED: similar to hCG1802057 [Homo sapiens] 37 0.058
gi|239751125 PREDICTED: hypothetical protein XP_002347719 [Homo ... 37 0.058
gi|239745616 PREDICTED: hypothetical protein XP_002344143 [Homo ... 37 0.058
gi|46370086 transcription factor 12 isoform c [Homo sapiens] 34 0.37
gi|46370084 transcription factor 12 isoform b [Homo sapiens] 34 0.37
gi|46370082 transcription factor 12 isoform a [Homo sapiens] 34 0.37
gi|46370080 transcription factor 12 isoform a [Homo sapiens] 34 0.37
gi|4507391 transcription factor 12 isoform b [Homo sapiens] 34 0.37
gi|168823435 hypothetical protein LOC79747 [Homo sapiens] 32 1.1
gi|56090620 NFKB activating protein-like [Homo sapiens] 32 1.1
gi|4557701 keratin 17 [Homo sapiens] 32 1.4
gi|63054848 coiled-coil domain containing 34 isoform 1 [Homo sap... 32 1.9
>gi|23312392 tigger transposable element derived 2 [Homo sapiens]
Length = 525
Score = 1055 bits (2727), Expect = 0.0
Identities = 525/525 (100%), Positives = 525/525 (100%)
Query: 1 MLGKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSD 60
MLGKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSD
Sbjct: 1 MLGKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSD 60
Query: 61 PTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFN 120
PTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFN
Sbjct: 61 PTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFN 120
Query: 121 ASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTG 180
ASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTG
Sbjct: 121 ASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTG 180
Query: 181 LFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGT 240
LFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGT
Sbjct: 181 LFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGT 240
Query: 241 DLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARPNE 300
DLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARPNE
Sbjct: 241 DLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARPNE 300
Query: 301 EMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYMDEGNDPKIFWKNL 360
EMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYMDEGNDPKIFWKNL
Sbjct: 301 EMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYMDEGNDPKIFWKNL 360
Query: 361 TVLDAIYEVSRAWNMVKSSTITKAWKKLFPGNEENSGMNIDEGAILAANLATVLQNTEEC 420
TVLDAIYEVSRAWNMVKSSTITKAWKKLFPGNEENSGMNIDEGAILAANLATVLQNTEEC
Sbjct: 361 TVLDAIYEVSRAWNMVKSSTITKAWKKLFPGNEENSGMNIDEGAILAANLATVLQNTEEC 420
Query: 421 EHVDIENIDQWFDSRSSDSSCQVLTDSESAEDQTKAAEQKPSSKSRKTELNPEKHISHKA 480
EHVDIENIDQWFDSRSSDSSCQVLTDSESAEDQTKAAEQKPSSKSRKTELNPEKHISHKA
Sbjct: 421 EHVDIENIDQWFDSRSSDSSCQVLTDSESAEDQTKAAEQKPSSKSRKTELNPEKHISHKA 480
Query: 481 ALEWTENLLDYLEQQDDMLLSDKLVLRRLRTIIRKKQKIQNNKNH 525
ALEWTENLLDYLEQQDDMLLSDKLVLRRLRTIIRKKQKIQNNKNH
Sbjct: 481 ALEWTENLLDYLEQQDDMLLSDKLVLRRLRTIIRKKQKIQNNKNH 525
>gi|22547224 jerky homolog-like [Homo sapiens]
Length = 524
Score = 674 bits (1738), Expect = 0.0
Identities = 325/519 (62%), Positives = 408/519 (78%)
Query: 1 MLGKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSD 60
M GKRKRVVLTIKDKLDIIKKLE+G S K+L+V+YGIGE+TVRDI+KNKE+II YA+SSD
Sbjct: 1 MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSD 60
Query: 61 PTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFN 120
TS ++KRKSMK S YEELDR M+EWFNQQ+ G P+SG ICAK+A+FFF ALGM+GDFN
Sbjct: 61 STSLLAKRKSMKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAEFFFYALGMDGDFN 120
Query: 121 ASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTG 180
S+GWLTRFKQRH I + + +L GDETA +FC +F++F+E+ENLQPEQIY AD+TG
Sbjct: 121 PSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDFIERENLQPEQIYNADETG 180
Query: 181 LFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGT 240
LFWKCLPSR ++ + G +S ER+ IMCCANATGLHKL LCVVGKAKKPR+FK T
Sbjct: 181 LFWKCLPSRISVIKGKCTVPGHKSIEERVTIMCCANATGLHKLKLCVVGKAKKPRSFKST 240
Query: 241 DLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARPNE 300
D NLPV+Y+SQKGAW++ S+FRQWF+K FVPQV+++L+SKGL EKAVLLLD P PNE
Sbjct: 241 DTLNLPVSYFSQKGAWMDLSIFRQWFDKIFVPQVREYLRSKGLQEKAVLLLDNSPTHPNE 300
Query: 301 EMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYMDEGNDPKIFWKNL 360
+L SDDG+I KYLPPNV SLIQP QGV+AT+KR YRAGLLQ ++EGND K FWK L
Sbjct: 301 NVLRSDDGQIFAKYLPPNVASLIQPSDQGVIATMKRNYRAGLLQNNLEEGNDLKSFWKKL 360
Query: 361 TVLDAIYEVSRAWNMVKSSTITKAWKKLFPGNEENSGMNIDEGAILAANLATVLQNTEEC 420
T+LDA+YE++ AWN+VK TI++AWKK+ P EE ++ D I A +A +LQ+T+
Sbjct: 361 TLLDALYEIAMAWNLVKPVTISRAWKKILPMVEEKESLDFDVEDISVATVAAILQHTKGL 420
Query: 421 EHVDIENIDQWFDSRSSDSSCQVLTDSESAEDQTKAAEQKPSSKSRKTELNPEKHISHKA 480
E+V EN+++W + S++ +VLTDSE A++ ++ + EL PEKHI+H A
Sbjct: 421 ENVTTENLEKWLEVDSTEPGYEVLTDSEIIRRAQGQADESSENEEEEIELIPEKHINHAA 480
Query: 481 ALEWTENLLDYLEQQDDMLLSDKLVLRRLRTIIRKKQKI 519
AL+WTENLLDYLEQQ DM+L D+LV+R+LR IR KQK+
Sbjct: 481 ALQWTENLLDYLEQQGDMILPDRLVIRKLRATIRNKQKM 519
>gi|117938293 jerky isoform a [Homo sapiens]
Length = 568
Score = 291 bits (744), Expect = 1e-78
Identities = 177/538 (32%), Positives = 283/538 (52%), Gaps = 37/538 (6%)
Query: 4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTS 63
KRKRVVLT+K+K+DI +LE+G S K L Y +G ST+ DI+ +K +++ + SSD
Sbjct: 14 KRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNK 73
Query: 64 GVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNASS 123
+ +R+++ + E LDRV+ EWF ++++G+PVSG + ++AK F++ + + S
Sbjct: 74 ALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSG 133
Query: 124 GWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTGLFW 183
GWL RFK RHGI K K D AA +FC F+ + L EQ+Y AD+TGLFW
Sbjct: 134 GWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFW 193
Query: 184 KCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGTDLS 243
+CLP+ T + G + ++R+ ++ CANATG H+L +GK PRAFKG +
Sbjct: 194 RCLPNPT---PEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSGPRAFKG--IQ 248
Query: 244 NLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLE--KAVLLLDFPPARPNE- 300
+LPV Y +Q AW+++ +F WF FVP V++H ++ GL E KAVLLLD A P E
Sbjct: 249 HLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHPQEA 308
Query: 301 EMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYMDEGNDPKIFWKNL 360
E++SS+ + +LP +V SL+QPM QG+ R ++ +++ +
Sbjct: 309 ELVSSN---VFTIFLPASVASLVQPMEQGI--------RRDFMRNFINPPVPLQGPHARY 357
Query: 361 TVLDAIYEVSRAWNMVKSSTITKAWKKLFPGNEENSGMNIDEGAILAANLATVLQNTEEC 420
+ DAI+ V+ AWN V S +AW+KL+P G + +E L A V + +
Sbjct: 358 NMNDAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEEE--LEAECFPVKPHNKSF 415
Query: 421 EHVDIENIDQWFDSRSSDSSCQVLT---DSESAEDQTKAAEQKPSSKSRKTELNPE---- 473
H+ +E + + Q + AE A P+ +E P+
Sbjct: 416 AHI-LELVKEGSSCPGQLRQRQAASWGVAGREAEGGRPPAATSPAEVVWSSEKTPKADQD 474
Query: 474 --------KHISHKAALEWTENLLDYLEQQDDMLLSDKLVLRRLRTIIRKKQKIQNNK 523
+ ++ + A + +L + E+Q + LR LR + R +Q+++ +
Sbjct: 475 GGGDPGEGEEVAWEQAAVAFDAVLRFAERQPCFSAQEVGQLRALRAVFRSQQQVRRRR 532
>gi|117938295 jerky isoform b [Homo sapiens]
Length = 556
Score = 289 bits (740), Expect = 4e-78
Identities = 155/402 (38%), Positives = 236/402 (58%), Gaps = 19/402 (4%)
Query: 4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTS 63
KRKRVVLT+K+K+DI +LE+G S K L Y +G ST+ DI+ +K +++ + SSD
Sbjct: 14 KRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRFFASSDSNK 73
Query: 64 GVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNASS 123
+ +R+++ + E LDRV+ EWF ++++G+PVSG + ++AK F++ + + S
Sbjct: 74 ALEQRRTLHTPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKAKDFYEQMQLTEPCVFSG 133
Query: 124 GWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGADQTGLFW 183
GWL RFK RHGI K K D AA +FC F+ + L EQ+Y AD+TGLFW
Sbjct: 134 GWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRSLAAEHGLSAEQVYNADETGLFW 193
Query: 184 KCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGTDLS 243
+CLP+ T + G + ++R+ ++ CANATG H+L +GK PRAFKG +
Sbjct: 194 RCLPNPT---PEGGAVPGPKQGKDRLTVLMCANATGSHRLKPLAIGKCSGPRAFKG--IQ 248
Query: 244 NLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLE--KAVLLLDFPPARPNE- 300
+LPV Y +Q AW+++ +F WF FVP V++H ++ GL E KAVLLLD A P E
Sbjct: 249 HLPVAYKAQGNAWVDKEIFSDWFHHIFVPSVREHFRTIGLPEDSKAVLLLDSSRAHPQEA 308
Query: 301 EMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYMDEGNDPKIFWKNL 360
E++SS+ + +LP +V SL+QPM QG+ R ++ +++ +
Sbjct: 309 ELVSSN---VFTIFLPASVASLVQPMEQGI--------RRDFMRNFINPPVPLQGPHARY 357
Query: 361 TVLDAIYEVSRAWNMVKSSTITKAWKKLFPGNEENSGMNIDE 402
+ DAI+ V+ AWN V S +AW+KL+P G + +E
Sbjct: 358 NMNDAIFSVACAWNAVPSHVFRRAWRKLWPSVAFAEGSSSEE 399
>gi|22325392 tigger transposable element derived 7 [Homo sapiens]
Length = 549
Score = 236 bits (603), Expect = 3e-62
Identities = 138/400 (34%), Positives = 214/400 (53%), Gaps = 20/400 (5%)
Query: 6 KRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSD-PTSG 64
K L +++K+ ++ ++E G S K + +GI +ST DIKKNK+ I+++ D P G
Sbjct: 6 KYTTLNLEEKMKVLSRIEAGRSLKSVMDEFGISKSTFYDIKKNKKLILDFVLKQDMPLVG 65
Query: 65 VSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNASSG 124
KRK + Y ++D + W+ Q+++ G+PV G A+ F G DF AS+G
Sbjct: 66 AEKRKRTTGAKYGDVDDAVYMWYQQKRSAGVPVRGVELQAAAERFARCFGRT-DFKASTG 124
Query: 125 WLTRFKQRHGIPKAAGKGTKLKGDETAARE-FCGSFQEFVEKENLQPEQIYGADQTGLFW 183
WL RF+ RH I G G ++ + E F +++E L Q+Y D+T LFW
Sbjct: 125 WLFRFRNRHAIGNRKGCGEQVLSSVSENVEPFRQKLSMIIKEEKLCLAQLYSGDETDLFW 184
Query: 184 KCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGTDLS 243
K +P + D G + ++ER+ CANA G HKL ++GK+K P++ K D S
Sbjct: 185 KSMPENSQASRKDICLPGKKINKERLSAFLCANADGTHKLKSIIIGKSKLPKSVK-EDTS 243
Query: 244 NLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLL-----EKAVLLLDFPPARP 298
LPV Y K W + +F +WF + FVP+V +H + L +A+LLLD PA P
Sbjct: 244 TLPVIYKPSKDVWFTRELFSEWFFQNFVPEV-RHFQLNVLRFHDEDVRALLLLDSCPAHP 302
Query: 299 NEEMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYM----------D 348
+ E L+S+DGRI + P N ++LIQPM+QGV+ + KR YR L++ + +
Sbjct: 303 SSESLTSEDGRIKCMFFPHNTSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDEQE 362
Query: 349 EGNDPKIFWKNLTVLDAIYEVSRAWNMVKSSTITKAWKKL 388
+G+ K + AI+ +++W VK TI AW+ L
Sbjct: 363 KGDKGVSKIKIYNIKSAIFNWAKSWEEVKQITIANAWENL 402
>gi|22209001 hypothetical protein LOC200765 [Homo sapiens]
Length = 591
Score = 220 bits (561), Expect = 2e-57
Identities = 135/456 (29%), Positives = 229/456 (50%), Gaps = 28/456 (6%)
Query: 4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTS 63
++ R LT+ KL++IK EEG+S ++ G+ TV + KE+ + S+ P +
Sbjct: 9 RKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKFLKEVKSATPMN 68
Query: 64 GVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDAL-------GME 116
RK ++S ++++V++ W Q + IP+S ++ +A F+++ E
Sbjct: 69 TRMIRK--RNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTLFNSMKAERGVEAAE 126
Query: 117 GDFNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKENLQPEQIYGA 176
F AS GW RFK+R +G D AA + + + +++ +QI+
Sbjct: 127 EKFEASRGWFMRFKERSHFHNIKAQGEAASADVEAAASYPEALAKIIDEGGYTKQQIFNV 186
Query: 177 DQTGLFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRA 236
D+T +WK +PSRT ++S G ++S++R+ ++ ANA G KL ++ ++ PRA
Sbjct: 187 DETAFYWKKMPSRTFIAREEKSVPGFKASKDRLTLLLGANAAGDFKLKPMLIYHSENPRA 246
Query: 237 FKGTDLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPA 296
K S LPV Y A + +F WF +YF P V+ + K + K +LL+D P+
Sbjct: 247 LKNYTKSTLPVLYKWNSKARMTAHLFTAWFTEYFKPTVETYCSEKKIPFKILLLIDNAPS 306
Query: 297 RPNEEMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYM-------DE 349
P M ++ +I ++P N TS++QPM QGV++T K YY K + +
Sbjct: 307 HPRALMEIYEEINVI--FMPANTTSILQPMDQGVISTFKSYYLRNTFHKALAAMDSDVSD 364
Query: 350 GNDP---KIFWKNLTVLDAIYEVSRAWNMVKSSTITKAWKKLFP---GNEENSGMNIDEG 403
G+ K FWK T+LDAI + +W VK ST+T WKKL P + E +++E
Sbjct: 365 GSGQSKLKTFWKGFTILDAIKNIRDSWEEVKLSTLTGVWKKLIPTLIDDYEGFKTSVEE- 423
Query: 404 AILAANLATVLQNTE-ECEHVDIENIDQWFDSRSSD 438
++A++ + + E E E D+ + Q D +D
Sbjct: 424 --VSADVVEIAKELELEVEPEDVTELLQSHDKTLTD 457
>gi|22219477 tigger transposable element derived 4 [Homo sapiens]
Length = 512
Score = 164 bits (415), Expect = 2e-40
Identities = 132/505 (26%), Positives = 242/505 (47%), Gaps = 43/505 (8%)
Query: 5 RKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANS--SDPT 62
+K+ L+I++K+DII +E G +++ YGI ++++ I KNK++++ S DP
Sbjct: 16 KKKKSLSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDKVLEAFESLRFDP- 74
Query: 63 SGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNAS 122
KRK ++++ Y +L+ ++ W+ + +PV+G + +A F LG DF S
Sbjct: 75 ----KRKRLRTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKANDFAQKLG-HNDFKCS 129
Query: 123 SGWLTRFKQRHGIPKAAG--KGTKLKGDETAAREFCGSFQEFVE--KENLQPEQIYGADQ 178
+GWL RFK R+G+ A + T + D + +Q + + P+ ++ +
Sbjct: 130 NGWLDRFKSRYGLVFRAQPVEATGVPVDPSTV-----WYQNVLPYYLNDYHPKNVFNIKE 184
Query: 179 TGLFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFK 238
TGL ++ LP+ T + + + G + ++RI ++ N G KL L V+GK + P FK
Sbjct: 185 TGLLYRMLPTNTFAFKGETCSVG-KLCKDRITLVVGTNMDGSEKLPLLVIGKKRTPHCFK 243
Query: 239 GTDLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARP 298
G L +LPV Y + + AW+ VF QW K + + +++ + V+ ++ PA P
Sbjct: 244 G--LKSLPVCYEANRMAWMTSDVFEQWMRK-----LDEEFQAQ--QRRVVIFVESFPAHP 294
Query: 299 NEEMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYMDEGNDPKIFWK 358
+ L S I + + P ++S M QGV+ ++K YR L++K++ K F
Sbjct: 295 EVKNLKS----IELAFFPSCLSSKCIAMKQGVIKSLKIKYRHCLIKKFLSSVEGSKEF-- 348
Query: 359 NLTVLDAIYEVSRAWNMVKSSTITKAWK----KLFPGNEENSGMNIDEGAILAAN-LATV 413
++LDA+ + W V TI K+++ K G + + D G L A+ L
Sbjct: 349 TFSLLDAVDTLHLCWRAVTPETIVKSYEEAGFKSQKGESDITNAEKDTGLDLVADALGAG 408
Query: 414 LQNTEECEHVDIENIDQWFDSRSSDSSCQVLTDSESAEDQT--KAAEQKPSSKSRKTELN 471
++ E + +D ++ + + + ES D+T ++++ S TEL
Sbjct: 409 VEFPEGLSIEEYAALDDDLETCEAAPNGDSICTKESKSDETGFYTSDEEDDDGSPGTELP 468
Query: 472 PEKHISHKAALEWTENLLDYLEQQD 496
S A+ + L +L QD
Sbjct: 469 LP---SKSEAITALDTLKKFLRSQD 490
>gi|13569924 hypothetical protein LOC81789 [Homo sapiens]
Length = 521
Score = 164 bits (414), Expect = 2e-40
Identities = 110/396 (27%), Positives = 202/396 (51%), Gaps = 37/396 (9%)
Query: 3 GKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPT 62
G +KR ++++K+ ++ ++ G ++ +GI ST+ K++ + +
Sbjct: 5 GNKKRRQFSLEEKMKVVGAVDSGKRKGDVAKEFGITPSTLSTFLKDRTK---FEEKVREA 61
Query: 63 SGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNAS 122
S +RK M+S+ Y+++D+ + WF + I V+G++ K+A + LG + +F AS
Sbjct: 62 SVGPQRKRMRSALYDDIDKAVFAWFQEIHAKNILVTGSVIRKKALNLANMLGYD-NFQAS 120
Query: 123 SGWLTRFKQRHGIPKAA-----------GKGTKLKGDETAAREFCGSFQEFVEKENLQPE 171
GWL RF+ RHGI A G G K +E A E ++ P+
Sbjct: 121 VGWLNRFRDRHGIALKAVCREDSDRLMNGLGID-KINEWHAGEIIKLIADY------SPD 173
Query: 172 QIYGADQTGLFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKA 231
I+ AD+TG+F++ LP TL + D G + +++R+ + C NA+G K+ +VG++
Sbjct: 174 DIFNADETGVFFQLLPQHTLAAKGDHCRGG-KKAKQRLTALFCCNASGTEKMRPLIVGRS 232
Query: 232 KKPRAFKGTDLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLL 291
P K ++ +LP Y + + AW+ + +F +W +Q + K + +LL+
Sbjct: 233 ASPHCLK--NIHSLPCDYRANQWAWMTRDLFNEWL-------MQVDARMKRAERRILLLI 283
Query: 292 DFPPARPNEEMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYMDEGN 351
D A L RI V YLP N T+++QP++ G++ T+K Y++ LL++ + + N
Sbjct: 284 DNCSAHNMLPHLE----RIQVGYLPSNCTAVLQPLNLGIIHTMKVLYQSHLLKQILLKLN 339
Query: 352 DPKIFWKNLTVLDAIYEVSRAWNMVKSSTITKAWKK 387
+ + + + AI ++ AW VK ST+ K W+K
Sbjct: 340 SSE-DQEEVDIKQAIDMIAAAWWSVKPSTVVKCWQK 374
>gi|144922631 tigger transposable element derived 5 [Homo sapiens]
Length = 593
Score = 160 bits (404), Expect = 3e-39
Identities = 118/427 (27%), Positives = 196/427 (45%), Gaps = 50/427 (11%)
Query: 7 RVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSGVS 66
R +IKDKL I++++ G + +G+ T+R K++ ++ + G +
Sbjct: 4 RKAYSIKDKLQAIERVKGGERQASVCRDFGVPGGTLRGWLKDEPKLRWFLEQLGGEVG-T 62
Query: 67 KRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDAL-GMEGDFNASSGW 125
+RK M+ + EE+DR + WF + G+P+SG + QA+ F + G E F AS GW
Sbjct: 63 QRKKMRLANEEEIDRAVYAWFLALRQHGVPLSGPLIQAQAEAFARQIYGPECTFKASHGW 122
Query: 126 LTRFKQRHGIPK------------AAGKGTKLKGDETAAREFCGSFQEFV------EKEN 167
R+++RHGI + G +K +E A G + +
Sbjct: 123 FWRWQKRHGISSQRFYGEAGPPAPSPAPGPPVK-EEPALPSGAGPLPDRAPAPPPPAEGG 181
Query: 168 LQPEQIYGADQTGLFWKCLPSRTLTLET-DQSTSGC--RSSRERIIIMCCANATGLHKLN 224
EQIY A TGL+WK LP + D GC R +R+ ++ AN TG HKL
Sbjct: 182 YGDEQIYSASVTGLYWKLLPEQAAPPGAGDPGAGGCGRRWRGDRVTVLLAANLTGSHKLK 241
Query: 225 LCVVGKAKKPRAFKGTDLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLL 284
V+G+ P + + + P +Y AW+ + + R WF + FVP V+++L+ L
Sbjct: 242 PLVIGRLPDPPSLRHHNQDKFPASYRYSPDAWLSRPLLRGWFFEEFVPGVKRYLRRSCLQ 301
Query: 285 EKAVLLLDFPP-------------------ARPN----EEMLSSDDGRIIVKYLPPNVT- 320
+KAVLL+ PP RP E L + DG + V +L +
Sbjct: 302 QKAVLLVAHPPCPSPAASMPALDSEDAPVRCRPEPLGPPEELQTPDGAVRVLFLSKGSSR 361
Query: 321 -SLIQPMSQGVLATVKRYYRAGLLQKYMD-EGNDPKIFWKNLTVLDAIYEVSRAWNMVKS 378
+ P+ QGV+A K+ Y+ LL+ + P F ++ + D +Y +W++V++
Sbjct: 362 AHIPAPLEQGVVAAFKQLYKRELLRLAVSCASGSPLDFMRSFMLKDMLYLAGLSWDLVQA 421
Query: 379 STITKAW 385
+I + W
Sbjct: 422 GSIERCW 428
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 136 bits (343), Expect = 4e-32
Identities = 142/534 (26%), Positives = 237/534 (44%), Gaps = 101/534 (18%)
Query: 6 KRVVLTIKDKLDIIKKLEEGISFKKLSVV--YGIGESTVRDIKKNKERIINYANSSDPTS 63
KR LT ++K II+++EE +K + + I ST+ I KNK I+ +S+
Sbjct: 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAIL----ASERKY 59
Query: 64 GVSK--RKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNA 121
GV+ RK+ K S Y++L+ ++I WF Q + G+PV G I ++A + LGM+ DF A
Sbjct: 60 GVASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMD-DFTA 118
Query: 122 SSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFC--------------GSFQEFVEKEN 167
S+GWL RF++RHG+ +G + + A R GS + +E
Sbjct: 119 SNGWLDRFRRRHGVVSCSGV-ARARARNAAPRTPAAPASPAAVPSEGSGGSTTGWRAREE 177
Query: 168 LQP--------EQIYGADQTGLFWKCLPSRTLTLETDQSTSGC------RSSRERIIIMC 213
P + ++ A +T L++ LP DQ+ C R + +R+ ++
Sbjct: 178 QPPSVAEGYASQDVFSATETSLWYDFLP--------DQAAGLCGGDGRPRQATQRLSVLL 229
Query: 214 CANATGLHKLNLCVVGKAKKPRAFKGTDLSNLPVTYYSQKGAWIEQSVFRQWFEKYFVPQ 273
CANA G KL V GK+ KPRA + + LP Y + + V Q KY
Sbjct: 230 CANADGSEKLPPLVAGKSAKPRAGQ----AGLPCDYTANS----KGGVTTQALAKYL--- 278
Query: 274 VQKHLKSKGLLE-KAVLLLDFPPARPNEEMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLA 332
K L ++ E + VLLL A + + +S + + + PP + P+ +GV+
Sbjct: 279 --KALDTRMAAESRRVLLLAGRLAA--QSLDTSGLRHVQLAFFPPGT---VHPLERGVVQ 331
Query: 333 TVKRYYRAGLLQKYMD--EGNDPKIFWKNLTVLDAIYEVSRAWNMVKSSTITKAWKKLFP 390
VK +YR +L K M EG DP LT +A++ V+ AW V+ S I +++
Sbjct: 332 QVKGHYRQAMLLKAMAALEGQDPSGLQLGLT--EALHFVAAAWQAVEPSDIAACFREAGF 389
Query: 391 GNEENSGMNIDEGAILAANLATVLQNTEECEHVDIENIDQWFDSRSSDSSCQVLTDSESA 450
G N A + T L++ E E + E ++ +
Sbjct: 390 GGGPN------------ATITTSLKSEGEEEEEEEEEEEE---------------EEGEG 422
Query: 451 EDQTKAAEQKPSSKSRKTELNPEKHISHKAALEWTENLLDYLEQQDDMLLSDKL 504
E++ + E++ EL E+ + + ++ E E++D+ S+ L
Sbjct: 423 EEEEEEGEEEEEEGGEGEELGEEEEVEEEGDVDSDEE-----EEEDEESSSEGL 471
>gi|239755627 PREDICTED: similar to cag [Homo sapiens]
Length = 392
Score = 124 bits (312), Expect = 2e-28
Identities = 58/163 (35%), Positives = 101/163 (61%)
Query: 4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTS 63
KRK + L+I K+ +++KL+ G+S K L+ YG+G +T+ D+KK K++++ + SD
Sbjct: 60 KRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQI 119
Query: 64 GVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNASS 123
+ RK++ + E+LDRV+ EW Q++++ +P++G + KQAK + + L +EG+ S+
Sbjct: 120 LMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYST 179
Query: 124 GWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKE 166
GWL +FK+RHGI G K A +F G+F E++
Sbjct: 180 GWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGNFSNDDEQD 222
>gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo
sapiens]
Length = 392
Score = 124 bits (311), Expect = 2e-28
Identities = 58/163 (35%), Positives = 100/163 (61%)
Query: 4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTS 63
KRK + L+I K+ +++KL+ G+S K L+ YG+G +T+ D+KK K++++ + SD
Sbjct: 60 KRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQI 119
Query: 64 GVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNASS 123
+ RK++ + E+LDRV+ EW Q++++ +P++G + KQAK + + L +EG+ S+
Sbjct: 120 LMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYST 179
Query: 124 GWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKE 166
GWL +FK+RHGI G K A +F G F E++
Sbjct: 180 GWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGKFSNDDEQD 222
>gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo
sapiens]
Length = 392
Score = 124 bits (311), Expect = 2e-28
Identities = 58/163 (35%), Positives = 100/163 (61%)
Query: 4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTS 63
KRK + L+I K+ +++KL+ G+S K L+ YG+G +T+ D+KK K++++ + SD
Sbjct: 60 KRKHLCLSIAQKVKLLEKLDSGVSVKHLTEEYGVGMTTIYDLKKQKDKLLKFYAESDEQI 119
Query: 64 GVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFNASS 123
+ RK++ + E+LDRV+ EW Q++++ +P++G + KQAK + + L +EG+ S+
Sbjct: 120 LMKNRKTLHKAKNEDLDRVLKEWIRQRRSEHMPLNGMLIMKQAKIYHNELKIEGNCEYST 179
Query: 124 GWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQEFVEKE 166
GWL +FK+RHGI G K A +F G F E++
Sbjct: 180 GWLQKFKKRHGIKFLKTCGNKASAGHEATEKFTGKFSNDDEQD 222
>gi|23312394 tigger transposable element derived 3 [Homo sapiens]
Length = 471
Score = 101 bits (252), Expect = 1e-21
Identities = 102/411 (24%), Positives = 178/411 (43%), Gaps = 49/411 (11%)
Query: 4 KRKRVVLTIKDKLDIIKKLEEG-ISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPT 62
K+K L++ +K+ +++ L+E +S +++ + + + + I KNKE+++ +D
Sbjct: 6 KKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLL-----ADWC 60
Query: 63 SGVS--KRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGDFN 120
SG + +RK + S Y +D ++ W++ + V+G + +AK D +G DF
Sbjct: 61 SGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQ--DFV 118
Query: 121 ASSGWLTRFKQRHGIPKAAGKGTKLK-GDETAAREFCGSFQEFVEKENLQPEQIYGADQT 179
S GWL R+K+R+ + A E Q + ++ PE ++G +
Sbjct: 119 PSIGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLKDFSPEDVFGCAEL 178
Query: 180 GLFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKG 239
L ++ +P S C +++ ++ CAN+ G K + + G PR F G
Sbjct: 179 PLLYRAVPG---------SFGAC----DQVQVLLCANSRGTEKRRVLLGGLQAAPRCFFG 225
Query: 240 TDLSNLPVTYYSQKG-AWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARP 298
LP +Y+ G W+E ++ Q + + +G + LLL AR
Sbjct: 226 IRSEALPASYHPDLGIPWLE-----------WLAQFDRDMGQQG--RQVALLL---AARV 269
Query: 299 NEEMLSSDDGRIIVKYLPPNVTSLIQPMSQGVLATVKRYYRAGLLQKYM-----DEGNDP 353
EE L+ G VK LP +S P+ V+ K +YR LL K +G
Sbjct: 270 VEE-LAGLPGLYHVKLLPLAASSTTPPLPSSVVRAFKAHYRHRLLGKLAAIQSERDGTSL 328
Query: 354 KIFWKNLTVLDAIYEVSRAWNMVKSSTITKAW--KKLFPGNEENSGMNIDE 402
+TVLDA++ S AW V I ++ + L PG S E
Sbjct: 329 AEAGAGITVLDALHVASAAWAKVPPQLIFSSFIQEGLAPGKTPPSSHKTSE 379
>gi|49619234 hypothetical protein LOC92806 [Homo sapiens]
Length = 187
Score = 62.0 bits (149), Expect = 1e-09
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
Query: 4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTS 63
KR+R +T+ KL+++++ E G +++ + STV I+ +KE+I + + P
Sbjct: 16 KRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDSKEKIKASSQIATPLR 75
Query: 64 GVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKFFFDALGMEGD----- 118
S+ +S+ E +++++ W Q +S I ++A+ FD L E
Sbjct: 76 -ASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE--FDDLQREHGEGSQT 132
Query: 119 --FNASSGWLTRFKQRHGIP 136
F+AS GWL RFK+ H +P
Sbjct: 133 ERFHASQGWLVRFKECHCLP 152
>gi|46397390 pogo transposable element with ZNF domain isoform 1 [Homo
sapiens]
Length = 1410
Score = 44.3 bits (103), Expect = 3e-04
Identities = 74/331 (22%), Positives = 129/331 (38%), Gaps = 41/331 (12%)
Query: 23 EEGISFKKLSVVYGI----GESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEE 78
+E +S KKL VV E + + RI + + G + S EE
Sbjct: 970 KEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEAEE 1029
Query: 79 LDRVMIEWFNQQKTDGIPVSG-TICAKQAKFFFDALGMEGDFNASSGWLTRFKQRHGIPK 137
+ EW Q+ +PV+ T+ K K +EG F S W RF RH +
Sbjct: 1030 K---LAEWVLTQREQQLPVNEETLFQKATKI---GRSLEGGFKISYEWAVRFMLRHHLTP 1083
Query: 138 AAGKGTKLKGDETAAREFCGSFQEFVEK----ENLQPEQIYGADQTGLFWKCLPSRTLT- 192
A + + A E G F +FV++ ++L I D+ LF L + L+
Sbjct: 1084 HARRAVAHTLPKDVA-ENAGLFIDFVQRQIHNQDLPLSMIVAIDEISLF---LDTEVLSS 1139
Query: 193 ---LETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGTDLSNLP--V 247
E T G +++ A+ T L L + G+ +P +N+P +
Sbjct: 1140 DDRKENALQTVGTGEPWCDVVLAILADGTVLPTL-VFYRGQMDQP--------ANMPDSI 1190
Query: 248 TYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARPNEEMLSS-D 306
+++ + + + W + + QKH + K +L++D +EE+L+
Sbjct: 1191 LLEAKESGYSDDEIMELWSTRVW----QKHTACQ--RSKGMLVMDCHRTHLSEEVLAMLS 1244
Query: 307 DGRIIVKYLPPNVTSLIQPMSQGVLATVKRY 337
+ +P +S IQP+ + TVK +
Sbjct: 1245 ASSTLPAVVPAGCSSKIQPLDVCIKRTVKNF 1275
>gi|46397394 pogo transposable element with ZNF domain isoform 2 [Homo
sapiens]
Length = 1357
Score = 44.3 bits (103), Expect = 3e-04
Identities = 74/331 (22%), Positives = 129/331 (38%), Gaps = 41/331 (12%)
Query: 23 EEGISFKKLSVVYGI----GESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEE 78
+E +S KKL VV E + + RI + + G + S EE
Sbjct: 917 KEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEAEE 976
Query: 79 LDRVMIEWFNQQKTDGIPVSG-TICAKQAKFFFDALGMEGDFNASSGWLTRFKQRHGIPK 137
+ EW Q+ +PV+ T+ K K +EG F S W RF RH +
Sbjct: 977 K---LAEWVLTQREQQLPVNEETLFQKATKI---GRSLEGGFKISYEWAVRFMLRHHLTP 1030
Query: 138 AAGKGTKLKGDETAAREFCGSFQEFVEK----ENLQPEQIYGADQTGLFWKCLPSRTLT- 192
A + + A E G F +FV++ ++L I D+ LF L + L+
Sbjct: 1031 HARRAVAHTLPKDVA-ENAGLFIDFVQRQIHNQDLPLSMIVAIDEISLF---LDTEVLSS 1086
Query: 193 ---LETDQSTSGCRSSRERIIIMCCANATGLHKLNLCVVGKAKKPRAFKGTDLSNLP--V 247
E T G +++ A+ T L L + G+ +P +N+P +
Sbjct: 1087 DDRKENALQTVGTGEPWCDVVLAILADGTVLPTL-VFYRGQMDQP--------ANMPDSI 1137
Query: 248 TYYSQKGAWIEQSVFRQWFEKYFVPQVQKHLKSKGLLEKAVLLLDFPPARPNEEMLSS-D 306
+++ + + + W + + QKH + K +L++D +EE+L+
Sbjct: 1138 LLEAKESGYSDDEIMELWSTRVW----QKHTACQ--RSKGMLVMDCHRTHLSEEVLAMLS 1191
Query: 307 DGRIIVKYLPPNVTSLIQPMSQGVLATVKRY 337
+ +P +S IQP+ + TVK +
Sbjct: 1192 ASSTLPAVVPAGCSSKIQPLDVCIKRTVKNF 1222
>gi|117938307 doublecortin domain containing 2 [Homo sapiens]
Length = 476
Score = 37.7 bits (86), Expect = 0.026
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 376 VKSSTITKAWKKLFPGNEENSGMNIDEGAILAANLATVLQNTEECEHVDIENIDQWFDSR 435
V S +TK + + N + + N DEG A + + E + + ++ D R
Sbjct: 283 VNSEKLTKLKQNVKLKNSQETIPNSDEGIFKAGAERSETRGAAEVQEDEDTQVEVPVDQR 342
Query: 436 SSDSSCQVLTDSESAEDQTKAAEQKPSSKSRKTELNPEKHISHKAALEWTENLLDYLEQQ 495
++ ++ + E E K AEQK +L E A E E +LD+ EQQ
Sbjct: 343 PAE----IVDEEEDGEKANKDAEQKEDFSGMNGDLEEEGGREATDAPEQVEEILDHSEQQ 398
>gi|239756639 PREDICTED: similar to hCG1802057 [Homo sapiens]
Length = 86
Score = 36.6 bits (83), Expect = 0.058
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 10 LTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSG--VSK 67
+ + +K+ ++ KL+ G+S+ + + EST+R IKK ++ I + P S S
Sbjct: 1 MCLTEKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSI 60
Query: 68 RKSMKSSTYEELDRVMIEWFNQQKTD 93
+ + E++++ + W ++ D
Sbjct: 61 VRDEAMTKMEKMEKRLNLWIHEMSID 86
>gi|239751125 PREDICTED: hypothetical protein XP_002347719 [Homo
sapiens]
Length = 86
Score = 36.6 bits (83), Expect = 0.058
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 10 LTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSG--VSK 67
+ + +K+ ++ KL+ G+S+ + + EST+R IKK ++ I + P S S
Sbjct: 1 MCLTEKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSI 60
Query: 68 RKSMKSSTYEELDRVMIEWFNQQKTD 93
+ + E++++ + W ++ D
Sbjct: 61 VRDEAMTKMEKMEKRLNLWIHEMSID 86
>gi|239745616 PREDICTED: hypothetical protein XP_002344143 [Homo
sapiens]
Length = 86
Score = 36.6 bits (83), Expect = 0.058
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 10 LTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSG--VSK 67
+ + +K+ ++ KL+ G+S+ + + EST+R IKK ++ I + P S S
Sbjct: 1 MCLTEKVRVLDKLQSGMSYSAVGHELNVNESTIRYIKKKEKEIHRSVREAAPDSAEVTSI 60
Query: 68 RKSMKSSTYEELDRVMIEWFNQQKTD 93
+ + E++++ + W ++ D
Sbjct: 61 VRDEAMTKMEKMEKRLNLWIHEMSID 86
>gi|46370086 transcription factor 12 isoform c [Homo sapiens]
Length = 512
Score = 33.9 bits (76), Expect = 0.37
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 376 VKSSTITKAWKKLFPGNEEN--SGMNIDEGAILAANLATVLQNTEECEHVDIENIDQWFD 433
V SST+T + L +EN G+ G ++ + T +N E+ E++
Sbjct: 312 VLSSTVTTSSTDLNHKTQENYRGGLQSQSGTVVTTEIKT--ENKEKDENL---------- 359
Query: 434 SRSSDSSCQVLTDSESAEDQTKAAEQ-KPSSKSRKTELNPEKHISHKAALEWTENLLDYL 492
SS + +D ES++ K + + + SS + +LNPE+ I + N + L
Sbjct: 360 -HEPPSSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDLNPEQKIEREKERRMANNARERL 418
Query: 493 EQQD 496
+D
Sbjct: 419 RVRD 422
>gi|46370084 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 33.9 bits (76), Expect = 0.37
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 376 VKSSTITKAWKKLFPGNEEN--SGMNIDEGAILAANLATVLQNTEECEHVDIENIDQWFD 433
V SST+T + L +EN G+ G ++ + T +N E+ E++
Sbjct: 482 VLSSTVTTSSTDLNHKTQENYRGGLQSQSGTVVTTEIKT--ENKEKDENL---------- 529
Query: 434 SRSSDSSCQVLTDSESAEDQTKAAEQ-KPSSKSRKTELNPEKHISHKAALEWTENLLDYL 492
SS + +D ES++ K + + + SS + +LNPE+ I + N + L
Sbjct: 530 -HEPPSSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDLNPEQKIEREKERRMANNARERL 588
Query: 493 EQQD 496
+D
Sbjct: 589 RVRD 592
>gi|46370082 transcription factor 12 isoform a [Homo sapiens]
Length = 706
Score = 33.9 bits (76), Expect = 0.37
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 376 VKSSTITKAWKKLFPGNEEN--SGMNIDEGAILAANLATVLQNTEECEHVDIENIDQWFD 433
V SST+T + L +EN G+ G ++ + T +N E+ E++
Sbjct: 506 VLSSTVTTSSTDLNHKTQENYRGGLQSQSGTVVTTEIKT--ENKEKDENL---------- 553
Query: 434 SRSSDSSCQVLTDSESAEDQTKAAEQ-KPSSKSRKTELNPEKHISHKAALEWTENLLDYL 492
SS + +D ES++ K + + + SS + +LNPE+ I + N + L
Sbjct: 554 -HEPPSSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDLNPEQKIEREKERRMANNARERL 612
Query: 493 EQQD 496
+D
Sbjct: 613 RVRD 616
>gi|46370080 transcription factor 12 isoform a [Homo sapiens]
Length = 706
Score = 33.9 bits (76), Expect = 0.37
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 376 VKSSTITKAWKKLFPGNEEN--SGMNIDEGAILAANLATVLQNTEECEHVDIENIDQWFD 433
V SST+T + L +EN G+ G ++ + T +N E+ E++
Sbjct: 506 VLSSTVTTSSTDLNHKTQENYRGGLQSQSGTVVTTEIKT--ENKEKDENL---------- 553
Query: 434 SRSSDSSCQVLTDSESAEDQTKAAEQ-KPSSKSRKTELNPEKHISHKAALEWTENLLDYL 492
SS + +D ES++ K + + + SS + +LNPE+ I + N + L
Sbjct: 554 -HEPPSSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDLNPEQKIEREKERRMANNARERL 612
Query: 493 EQQD 496
+D
Sbjct: 613 RVRD 616
>gi|4507391 transcription factor 12 isoform b [Homo sapiens]
Length = 682
Score = 33.9 bits (76), Expect = 0.37
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 376 VKSSTITKAWKKLFPGNEEN--SGMNIDEGAILAANLATVLQNTEECEHVDIENIDQWFD 433
V SST+T + L +EN G+ G ++ + T +N E+ E++
Sbjct: 482 VLSSTVTTSSTDLNHKTQENYRGGLQSQSGTVVTTEIKT--ENKEKDENL---------- 529
Query: 434 SRSSDSSCQVLTDSESAEDQTKAAEQ-KPSSKSRKTELNPEKHISHKAALEWTENLLDYL 492
SS + +D ES++ K + + + SS + +LNPE+ I + N + L
Sbjct: 530 -HEPPSSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDLNPEQKIEREKERRMANNARERL 588
Query: 493 EQQD 496
+D
Sbjct: 589 RVRD 592
>gi|168823435 hypothetical protein LOC79747 [Homo sapiens]
Length = 1667
Score = 32.3 bits (72), Expect = 1.1
Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 13/181 (7%)
Query: 340 AGLLQKYMDEGNDPKIFWKNLTVLDAIYEVSRAWNMVKSSTITKAWKKLFPGNEENSGM- 398
AG K M + WK +++++ V ST +++ PG EE
Sbjct: 1455 AGSESKEMTQTGSGSAVWKK-------WQLTKGLRDVAKSTSSESGGVSSPGKEEREQST 1507
Query: 399 ---NIDEGAILAANLATVLQNTEECEHVDIENIDQWFDSRSSDSSCQVLTDSESAEDQTK 455
NI G T+L+ + +E +D R +D+ + TD + + +
Sbjct: 1508 RKENIQTGP--RTRSPTILETSPRLIRKALEFMDLSQYVRKTDTDPLLQTDELNQQQAMQ 1565
Query: 456 AAEQKPSSKSRKTELNPEKHISHKAALEWTENLLDYLEQQDDMLLSDKLVLRRLRTIIRK 515
AE+ + +T + ++I + L+ + +LD ++ D L + + +R R
Sbjct: 1566 KAEEIHQFRQHRTRVLSIRNIDQEERLKLKDEVLDMYKEMQDSLDEARQKIFDIREEYRN 1625
Query: 516 K 516
K
Sbjct: 1626 K 1626
>gi|56090620 NFKB activating protein-like [Homo sapiens]
Length = 402
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 421 EHVDIENIDQWFDSRSSDSSCQVLTDSESAEDQTKAAEQKPSSKSRKTELNPEKHISHKA 480
EH +E+ ++ +SS S DS S E + K + + K RK + + KH +
Sbjct: 150 EHTPVEDEEEVTHQKSSSS------DSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKYSD 203
Query: 481 ALEWTENLLDYLEQQDDMLLSDKLVLRRLRTIIRKKQKIQNNKN 524
+ +E+ D DD DK ++ + +KK K + KN
Sbjct: 204 SDSNSES--DTNSDSDD----DKKRVKAKKKKKKKKHKTKKKKN 241
>gi|4557701 keratin 17 [Homo sapiens]
Length = 432
Score = 32.0 bits (71), Expect = 1.4
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 391 GNEENSGMNIDEGAILAANLATVLQNTEECEHVDIENIDQWFDSRSSDSSCQVLTDSESA 450
G E N M+ G L+ L + E+ + ++ + WF S++ + + +V T+SE
Sbjct: 234 GGEINVEMDAAPGVDLSRILNEMRDQYEKMAEKNRKDAEDWFFSKTEELNREVATNSELV 293
Query: 451 ED-QTKAAEQKPSSKSRKTELNPEKHISHKAALE 483
+ +++ +E + + ++ + EL + +S KA+LE
Sbjct: 294 QSGKSEISELRRTMQALEIEL--QSQLSMKASLE 325
>gi|63054848 coiled-coil domain containing 34 isoform 1 [Homo
sapiens]
Length = 373
Score = 31.6 bits (70), Expect = 1.9
Identities = 15/70 (21%), Positives = 33/70 (47%)
Query: 418 EECEHVDIENIDQWFDSRSSDSSCQVLTDSESAEDQTKAAEQKPSSKSRKTELNPEKHIS 477
+E E + +++ + + Q ++AE+ + ++K K ++ E+ +K I+
Sbjct: 213 KEMEEKAAKELEKEYLQEKAKEKYQEWLKKKNAEECERKKKEKEKEKQQQAEIQEKKEIA 272
Query: 478 HKAALEWTEN 487
K EW EN
Sbjct: 273 EKKFQEWLEN 282
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,048,953
Number of Sequences: 37866
Number of extensions: 811644
Number of successful extensions: 2553
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2472
Number of HSP's gapped (non-prelim): 56
length of query: 525
length of database: 18,247,518
effective HSP length: 107
effective length of query: 418
effective length of database: 14,195,856
effective search space: 5933867808
effective search space used: 5933867808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.