Guide to the Human Genome
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Name: DCDC2 Sequence: fasta or formatted (476aa) NCBI GI: 117938307
Description:

doublecortin domain containing 2

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         29           2
 C cysteine            0.2          1           1
 D aspartate           5.7         27           1
 E glutamate          10.5         50           3
 F phenylalanine       2.7         13           1
 G glycine             8.0         38           2
 H histidine           1.7          8           1
 I isoleucine          4.0         19           1
 K lysine              8.2         39           2
 L leucine             6.7         32           2
 M methionine          1.1          5           1
 N asparagine          5.5         26           2
 P proline             5.5         26           2
 Q glutamine           5.9         28           2
 R arginine            6.5         31           2
 S serine              7.8         37           2
 T threonine           3.8         18           1
 V valine              8.2         39           2
 W tryptophan          0.2          1           1
 Y tyrosine            1.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   doublecortin domain containing 2 
DCDC2B                0.187   doublecortin domain containing 2B 
LOC728597             0.176   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.171   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.171   PREDICTED: doublecortin domain-containing protein E...
DCLK1                 0.085   doublecortin-like kinase 1 
DCX                   0.078   doublecortin isoform c 
DCX                   0.078   doublecortin isoform c 
DCX                   0.078   doublecortin isoform a 
DCX                   0.076   doublecortin isoform b 
DCLK2                 0.073   doublecortin-like kinase 2 isoform b 
DCLK2                 0.073   doublecortin-like kinase 2 isoform a 
RP1                   0.062   retinitis pigmentosa RP1 protein 
RP1L1                 0.044   retinitis pigmentosa 1-like 1 
ARHGAP30              0.029   Rho GTPase activating protein 30 isoform 1 
SMTNL1                0.026   smoothelin-like 1 
HTATSF1               0.025   HIV-1 Tat specific factor 1 
HTATSF1               0.025   HIV-1 Tat specific factor 1 
NEFM                  0.024   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.024   neurofilament, medium polypeptide 150kDa isoform 2 ...
CYLC2                 0.024   cylicin 2 
IWS1                  0.024   IWS1 homolog 
NSBP1                 0.023   nucleosomal binding protein 1 
YTHDC1                0.023   splicing factor YT521-B isoform 2 
YTHDC1                0.023   splicing factor YT521-B isoform 1 
PALM3                 0.022   hypothetical protein LOC342979 
LOC100133758          0.022   PREDICTED: hypothetical protein, partial 
PELP1                 0.022   proline, glutamic acid and leucine rich protein 1 [...
EIF5B                 0.022   eukaryotic translation initiation factor 5B 
LEO1                  0.021   Leo1, Paf1/RNA polymerase II complex component, homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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