Guide to the Human Genome
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Name: CCDC42 Sequence: fasta or formatted (316aa) NCBI GI: 226494053
Description:

coiled-coil domain containing 42 isoform 1

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [242aa] coiled-coil domain containing 42 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         21           2
 C cysteine            0.3          1           1
 D aspartate           3.5         11           2
 E glutamate          12.7         40           3
 F phenylalanine       2.8          9           1
 G glycine             1.9          6           1
 H histidine           2.8          9           1
 I isoleucine          6.0         19           1
 K lysine             10.8         34           3
 L leucine            10.8         34           3
 M methionine          5.1         16           1
 N asparagine          3.5         11           2
 P proline             0.6          2           1
 Q glutamine           9.2         29           2
 R arginine            7.6         24           2
 S serine              4.1         13           1
 T threonine           3.5         11           1
 V valine              4.4         14           2
 W tryptophan          1.6          5           1
 Y tyrosine            2.2          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 42 isoform 1 
CCDC42                0.503   coiled-coil domain containing 42 isoform 2 
CCDC42B               0.256   coiled-coil domain containing 42B 
CCDC37                0.051   coiled-coil domain containing 37 
RB1CC1                0.049   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.049   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
MYH9                  0.047   myosin, heavy polypeptide 9, non-muscle 
MYH10                 0.045   myosin, heavy polypeptide 10, non-muscle 
CCDC19                0.045   nasopharyngeal epithelium specific protein 1 
TCHH                  0.044   trichohyalin 
MYH11                 0.039   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.039   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.039   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.039   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
C2orf77               0.037   hypothetical protein LOC129881 
CCDC38                0.037   coiled-coil domain containing 38 
MYO10                 0.037   myosin X 
GRIPAP1               0.037   GRIP1 associated protein 1 isoform 1 
CLIP1                 0.035   restin isoform b 
CLIP1                 0.035   restin isoform a 
CCDC46                0.035   coiled-coil domain containing 46 isoform a 
GRIPAP1               0.035   GRIP1 associated protein 1 isoform 2 
CCDC30                0.034   coiled-coil domain containing 30 
CUX1                  0.034   cut-like homeobox 1 isoform a 
CUX1                  0.034   cut-like homeobox 1 isoform b 
MYH15                 0.034   myosin, heavy polypeptide 15 
FBF1                  0.034   Fas (TNFRSF6) binding factor 1 
CEP250                0.034   centrosomal protein 2 
ALS2CR12              0.034   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
CGN                   0.034   cingulin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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