Guide to the Human Genome
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Name: ALS2CR12 Sequence: fasta or formatted (422aa) NCBI GI: 189011592
Description:

amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {445aa} amyotrophic lateral sclerosis 2 (juvenile) chromosome region, can...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         19           2
 C cysteine            1.4          6           1
 D aspartate           3.8         16           2
 E glutamate          13.7         58           2
 F phenylalanine       2.4         10           1
 G glycine             2.8         12           1
 H histidine           1.9          8           1
 I isoleucine          5.7         24           2
 K lysine             12.6         53           3
 L leucine             9.5         40           2
 M methionine          3.1         13           1
 N asparagine          5.7         24           2
 P proline             3.3         14           1
 Q glutamine           6.6         28           2
 R arginine            3.8         16           1
 S serine              7.1         30           2
 T threonine           5.0         21           1
 V valine              2.8         12           2
 W tryptophan          1.2          5           1
 Y tyrosine            3.1         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyotrophic lateral sclerosis 2 (juvenile) chromoso... 
ALS2CR12              0.984   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
LOC283767             0.054   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.053   PREDICTED: hypothetical protein LOC645202 
LOC727832             0.053   golgi autoantigen, golgin subfamily a-like 
CENPE                 0.049   centromere protein E 
EEA1                  0.049   early endosome antigen 1, 162kD 
ERC2                  0.048   cytomatrix protein p110 
C14orf145             0.044   hypothetical protein LOC145508 
WDR87                 0.044   NYD-SP11 protein 
LOC440243             0.043   PREDICTED: Putative golgin subfamily A member 6-lik...
PMFBP1                0.043   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.043   polyamine modulated factor 1 binding protein 1 isof...
AKAP9                 0.043   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.043   A-kinase anchor protein 9 isoform 3 
LOC100133758          0.043   PREDICTED: hypothetical protein, partial 
C10orf118             0.043   CTCL tumor antigen L14-2 
UACA                  0.042   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.042   uveal autoantigen with coiled-coil domains and ankyr...
GOLGA4                0.042   golgi autoantigen, golgin subfamily a, 4 
DEF6                  0.042   differentially expressed in FDCP 6 homolog 
MNS1                  0.042   meiosis-specific nuclear structural 1 
MYH11                 0.042   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.042   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.042   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.042   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH7                  0.040   myosin, heavy chain 7, cardiac muscle, beta 
LRRIQ1                0.040   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.040   leucine-rich repeats and IQ motif containing 1 isof...
MYH6                  0.040   myosin heavy chain 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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