CCDC42B 14244

Name: CCDC42B	Sequence: fasta or formatted (308aa)		NCBI GI: 221554526
Description: coiled-coil domain containing 42B		Referenced in: Coiled-Coil Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.7 39 2 C cysteine 0.6 2 1 D aspartate 3.6 11 1 E glutamate 12.7 39 2 F phenylalanine 2.9 9 1 G glycine 3.2 10 1 H histidine 1.6 5 1 I isoleucine 1.3 4 1 K lysine 4.2 13 1 L leucine 16.2 50 3 M methionine 1.3 4 1 N asparagine 1.0 3 1 P proline 3.9 12 2 Q glutamine 11.0 34 2 R arginine 12.0 37 2 S serine 2.3 7 1 T threonine 3.2 10 1 V valine 3.9 12 1 W tryptophan 1.9 6 1 Y tyrosine 0.3 1 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 coiled-coil domain containing 42B CCDC42 0.264 coiled-coil domain containing 42 isoform 1 CCDC42 0.118 coiled-coil domain containing 42 isoform 2 LOC100133220 0.061 PREDICTED: hypothetical protein DEF6 0.056 differentially expressed in FDCP 6 homolog TCHH 0.054 trichohyalin LOC283685 0.054 PREDICTED: golgi autoantigen, golgin subfamily a-li... ZNF853 0.050 zinc finger protein 853 MYH10 0.049 myosin, heavy polypeptide 10, non-muscle LOC100130174 0.045 PREDICTED: hypothetical protein LOC100130174 0.045 PREDICTED: hypothetical protein LOC100130174 0.045 PREDICTED: hypothetical protein INCENP 0.045 inner centromere protein antigens 135/155kDa isofor... INCENP 0.045 inner centromere protein antigens 135/155kDa isofor... LOC283685 0.043 PREDICTED: golgi autoantigen, golgin subfamily a-li... CALCOCO1 0.043 coiled-coil transcriptional coactivator isoform 1 [H... PLEC1 0.043 plectin 1 isoform 11 PLEC1 0.043 plectin 1 isoform 10 PLEC1 0.043 plectin 1 isoform 8 PLEC1 0.043 plectin 1 isoform 7 PLEC1 0.043 plectin 1 isoform 6 PLEC1 0.043 plectin 1 isoform 3 PLEC1 0.043 plectin 1 isoform 2 PLEC1 0.043 plectin 1 isoform 1 LOC647042 0.043 PREDICTED: hypothetical protein isoform 1 SPTBN2 0.043 spectrin, beta, non-erythrocytic 2 CEP164 0.042 centrosomal protein 164kDa WDR87 0.042 NYD-SP11 protein CCDC18 0.042 sarcoma antigen NY-SAR-41 LOC645202 0.040 PREDICTED: hypothetical protein LOC645202 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.