CCDC42 15423

Name: CCDC42	Sequence: fasta or formatted (242aa)		NCBI GI: 226528968
Description: coiled-coil domain containing 42 isoform 2		Referenced in: Coiled-Coil Proteins
Other entries for this name: alt prot [316aa] coiled-coil domain containing 42 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 14 2 C cysteine 0.4 1 1 D aspartate 2.9 7 1 E glutamate 12.4 30 3 F phenylalanine 2.5 6 1 G glycine 2.1 5 1 H histidine 2.9 7 1 I isoleucine 5.8 14 1 K lysine 12.4 30 3 L leucine 11.6 28 3 M methionine 5.0 12 1 N asparagine 3.3 8 1 P proline 0.8 2 1 Q glutamine 9.5 23 2 R arginine 6.2 15 2 S serine 4.1 10 1 T threonine 4.1 10 1 V valine 4.5 11 2 W tryptophan 1.7 4 1 Y tyrosine 2.1 5 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 coiled-coil domain containing 42 isoform 2 CCDC42 0.698 coiled-coil domain containing 42 isoform 1 CCDC42B 0.151 coiled-coil domain containing 42B CCDC37 0.062 coiled-coil domain containing 37 CCDC38 0.049 coiled-coil domain containing 38 ERC1 0.040 RAB6-interacting protein 2 isoform epsilon ERC1 0.040 RAB6-interacting protein 2 isoform delta CEP164 0.040 centrosomal protein 164kDa UTRN 0.038 utrophin CENPE 0.038 centromere protein E CLIP1 0.038 restin isoform b CLIP1 0.038 restin isoform a WDR87 0.036 NYD-SP11 protein GIGYF2 0.036 GRB10 interacting GYF protein 2 isoform c GIGYF2 0.036 GRB10 interacting GYF protein 2 isoform a GIGYF2 0.036 GRB10 interacting GYF protein 2 isoform b GIGYF2 0.036 GRB10 interacting GYF protein 2 isoform b LOC440243 0.033 PREDICTED: Putative golgin subfamily A member 6-lik... CGN 0.033 cingulin CCDC21 0.033 coiled-coil domain containing 21 FILIP1L 0.033 filamin A interacting protein 1-like isoform 3 [Hom... FILIP1L 0.033 filamin A interacting protein 1-like isoform 1 [Hom... CGNL1 0.033 cingulin-like 1 GOLGB1 0.033 golgi autoantigen, golgin subfamily b, macrogolgin ... GRIPAP1 0.033 GRIP1 associated protein 1 isoform 1 STIM2 0.031 stromal interaction molecule 2 GOLGA4 0.031 golgi autoantigen, golgin subfamily a, 4 BAZ2B 0.031 bromodomain adjacent to zinc finger domain, 2B [Homo... LRRC45 0.031 leucine rich repeat containing 45 BAT2D1 0.031 HBxAg transactivated protein 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.