Guide to the Human Genome
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Name: DLGAP5 Sequence: fasta or formatted (842aa) NCBI GI: 226371669
Description:

discs large homolog 7 isoform b

Referenced in:

Liver
Synapses

Other entries for this name:
alt prot [846aa] discs large homolog 7 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         48           2
 C cysteine            1.4         12           1
 D aspartate           5.0         42           2
 E glutamate           8.3         70           2
 F phenylalanine       2.6         22           2
 G glycine             4.9         41           2
 H histidine           1.8         15           2
 I isoleucine          4.8         40           1
 K lysine              9.9         83           2
 L leucine             7.4         62           2
 M methionine          2.5         21           1
 N asparagine          5.7         48           3
 P proline             5.6         47           1
 Q glutamine           4.8         40           2
 R arginine            5.8         49           1
 S serine              8.9         75           3
 T threonine           7.0         59           2
 V valine              6.4         54           2
 W tryptophan          0.6          5           1
 Y tyrosine            1.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   discs large homolog 7 isoform b 
DLGAP5                0.960   discs large homolog 7 isoform a 
DLGAP4                0.035   disks large-associated protein 4 isoform c 
DLGAP4                0.035   disks large-associated protein 4 isoform b 
DLGAP4                0.035   disks large-associated protein 4 isoform a 
DLGAP1                0.034   discs large homolog-associated protein 1 isoform alp...
DLGAP1                0.034   discs large homolog-associated protein 1 isoform bet...
DLGAP2                0.033   discs large-associated protein 2 
DLGAP3                0.032   discs, large (Drosophila) homolog-associated protei...
MDC1                  0.012   mediator of DNA-damage checkpoint 1 
C15orf40              0.012   hypothetical protein LOC123207 isoform d 
TRDN                  0.012   triadin 
NEFH                  0.011   neurofilament, heavy polypeptide 200kDa 
TRAF3IP1              0.010   TNF receptor-associated factor 3 interacting protein...
CALD1                 0.010   caldesmon 1 isoform 3 
FLJ25363              0.010   hypothetical protein LOC401082 
CALD1                 0.010   caldesmon 1 isoform 4 
LUZP2                 0.009   leucine zipper protein 2 
CALD1                 0.009   caldesmon 1 isoform 2 
CALD1                 0.009   caldesmon 1 isoform 1 
SMC4                  0.009   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.009   SMC4 structural maintenance of chromosomes 4-like 1 ...
CALD1                 0.009   caldesmon 1 isoform 5 
C14orf178             0.009   hypothetical protein LOC283579 
CSPP1                 0.009   centrosome spindle pole associated protein 1 isofor...
CSPP1                 0.009   centrosome spindle pole associated protein 1 isofor...
NOLC1                 0.009   nucleolar and coiled-body phosphoprotein 1 
MAP1B                 0.009   microtubule-associated protein 1B 
EIF5B                 0.009   eukaryotic translation initiation factor 5B 
USP19                 0.009   ubiquitin thioesterase 19 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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