Guide to the Human Genome
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Name: DLGAP1 Sequence: fasta or formatted (977aa) NCBI GI: 19923274
Description:

discs large homolog-associated protein 1 isoform alpha

Referenced in:

Synapses

Other entries for this name:
alt prot [675aa] discs large homolog-associated protein 1 isoform beta
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         75           2
 C cysteine            2.4         23           1
 D aspartate           6.2         61           3
 E glutamate           6.9         67           3
 F phenylalanine       2.5         24           1
 G glycine             4.3         42           2
 H histidine           2.9         28           3
 I isoleucine          3.6         35           2
 K lysine              5.4         53           2
 L leucine             6.8         66           2
 M methionine          2.5         24           1
 N asparagine          3.5         34           2
 P proline             6.6         64           3
 Q glutamine           5.4         53           2
 R arginine            7.2         70           2
 S serine             12.2        119           3
 T threonine           6.4         63           5
 V valine              4.5         44           1
 W tryptophan          0.9          9           2
 Y tyrosine            2.4         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   discs large homolog-associated protein 1 isoform alp... 
DLGAP1                0.664   discs large homolog-associated protein 1 isoform bet...
DLGAP2                0.461   discs large-associated protein 2 
DLGAP4                0.397   disks large-associated protein 4 isoform a 
DLGAP3                0.310   discs, large (Drosophila) homolog-associated protei...
DLGAP4                0.205   disks large-associated protein 4 isoform b 
DLGAP4                0.146   disks large-associated protein 4 isoform c 
DLGAP5                0.029   discs large homolog 7 isoform b 
DLGAP5                0.029   discs large homolog 7 isoform a 
SRRM2                 0.008   splicing coactivator subunit SRm300 
LOC100131251          0.008   PREDICTED: hypothetical protein 
LOC100131251          0.008   PREDICTED: hypothetical protein 
SH3PXD2A              0.008   SH3 multiple domains 1 
KIAA1522              0.007   hypothetical protein LOC57648 
RICS                  0.007   Rho GTPase-activating protein isoform 1 
RICS                  0.007   Rho GTPase-activating protein isoform 2 
LOC100294501          0.006   PREDICTED: hypothetical protein 
MUC16                 0.006   mucin 16 
LOC729792             0.006   PREDICTED: hypothetical protein 
LOC729792             0.006   PREDICTED: hypothetical protein 
LOC729792             0.006   PREDICTED: hypothetical protein 
LOC100294249          0.006   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.006   PREDICTED: hypothetical protein 
LOC100294204          0.006   PREDICTED: hypothetical protein 
LOC100294136          0.006   PREDICTED: hypothetical protein 
LOC100294091          0.006   PREDICTED: hypothetical protein 
LOC730401             0.006   PREDICTED: hypothetical protein 
MUC5AC                0.006   mucin 5AC 
MUC5B                 0.006   mucin 5, subtype B, tracheobronchial 
MYST3                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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