Guide to the Human Genome
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Name: DLGAP4 Sequence: fasta or formatted (285aa) NCBI GI: 109891938
Description:

disks large-associated protein 4 isoform c

Referenced in:

Synapses

Other entries for this name:
alt prot [453aa] disks large-associated protein 4 isoform b
alt prot [989aa] disks large-associated protein 4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         28           2
 C cysteine            2.1          6           2
 D aspartate           7.4         21           1
 E glutamate           7.7         22           2
 F phenylalanine       1.8          5           1
 G glycine             3.2          9           1
 H histidine           0.7          2           1
 I isoleucine          2.8          8           1
 K lysine              7.7         22           2
 L leucine             9.1         26           2
 M methionine          1.4          4           1
 N asparagine          3.9         11           2
 P proline             8.8         25           4
 Q glutamine           6.3         18           2
 R arginine            6.3         18           2
 S serine             11.6         33           4
 T threonine           3.5         10           1
 V valine              2.8          8           1
 W tryptophan          1.8          5           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   disks large-associated protein 4 isoform c 
DLGAP4                1.000   disks large-associated protein 4 isoform b 
DLGAP4                1.000   disks large-associated protein 4 isoform a 
DLGAP2                0.522   discs large-associated protein 2 
DLGAP1                0.514   discs large homolog-associated protein 1 isoform alp...
DLGAP1                0.514   discs large homolog-associated protein 1 isoform bet...
DLGAP3                0.428   discs, large (Drosophila) homolog-associated protei...
DLGAP5                0.105   discs large homolog 7 isoform b 
DLGAP5                0.105   discs large homolog 7 isoform a 
NOLC1                 0.022   nucleolar and coiled-body phosphoprotein 1 
GREB1                 0.018   GREB1 protein isoform a 
HDGF2                 0.018   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.018   hepatoma-derived growth factor-related protein 2 iso...
ITGA6                 0.018   integrin alpha chain, alpha 6 isoform a precursor [...
ITGA6                 0.018   integrin alpha chain, alpha 6 isoform b precursor [...
PLEKHA6               0.018   phosphoinositol 3-phosphate-binding protein-3 
PRR12                 0.018   proline rich 12 
SETD1A                0.016   SET domain containing 1A 
UBR1                  0.016   ubiquitin protein ligase E3 component n-recognin 1 [...
NIN                   0.016   ninein isoform 4 
NIN                   0.016   ninein isoform 5 
NIN                   0.016   ninein isoform 1 
NIN                   0.016   ninein isoform 2 
IQCE                  0.016   IQ motif containing E isoform 1 
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
TNRC18                0.014   trinucleotide repeat containing 18 
NAP5                  0.014   Nck-associated protein 5 isoform 1 
TTN                   0.014   titin isoform N2-A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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