Guide to the Human Genome
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Name: FLJ25363 Sequence: fasta or formatted (95aa) NCBI GI: 224494572
Description:

hypothetical protein LOC401082

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5          9           2
 C cysteine            4.2          4           1
 D aspartate           2.1          2           1
 E glutamate           5.3          5           1
 F phenylalanine       5.3          5           2
 G glycine             9.5          9           3
 H histidine           7.4          7           2
 I isoleucine          5.3          5           2
 K lysine              4.2          4           1
 L leucine             8.4          8           2
 M methionine          1.1          1           1
 N asparagine          3.2          3           1
 P proline             7.4          7           2
 Q glutamine           5.3          5           1
 R arginine            2.1          2           1
 S serine              6.3          6           2
 T threonine           5.3          5           2
 V valine              4.2          4           1
 W tryptophan          2.1          2           1
 Y tyrosine            2.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC401082 
C14orf178             0.186   hypothetical protein LOC283579 
STAP2                 0.153   signal transducing adaptor family member 2 isoform 1...
C15orf40              0.131   hypothetical protein LOC123207 isoform d 
ZNF195                0.120   zinc finger protein 195 isoform 2 
ZNF195                0.120   zinc finger protein 195 isoform 1 
C9orf37               0.109   chromosome 9 open reading frame 37 
CHEK2                 0.093   protein kinase CHK2 isoform c 
GYG2                  0.093   glycogenin 2 isoform b 
FAM18B2               0.093   hypothetical protein LOC201158 isoform 1 
CNGA1                 0.087   cyclic nucleotide gated channel alpha 1 isoform 1 [...
USP19                 0.087   ubiquitin thioesterase 19 
LOC100128260          0.087   PREDICTED: hCG_1742852 
LOC100128260          0.087   PREDICTED: hCG_1742852 
DLGAP5                0.087   discs large homolog 7 isoform b 
LOC100294407          0.082   PREDICTED: similar to hCG2039376 
LOC100288773          0.082   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.082   PREDICTED: hCG_1742852 
LOC100132815          0.082   PREDICTED: hypothetical protein 
LOC100132815          0.082   PREDICTED: hypothetical protein 
LOC100132815          0.082   PREDICTED: hypothetical protein 
SULT1C2               0.082   sulfotransferase family, cytosolic, 1C, member 1 iso...
UTY                   0.077   tetratricopeptide repeat protein isoform 1 
TPCN1                 0.071   two pore segment channel 1 isoform 1 
REL                   0.066   v-rel reticuloendotheliosis viral oncogene homolog [H...
PODXL                 0.066   podocalyxin-like isoform 1 precursor 
OLAH                  0.066   oleoyl-ACP hydrolase isoform 1 
ADRA1A                0.060   alpha-1A-adrenergic receptor isoform 2 
SUGT1                 0.060   suppressor of G2 allele of SKP1 isoform a 
NOS3                  0.055   nitric oxide synthase 3 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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