Guide to the Human Genome
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Name: C14orf178 Sequence: fasta or formatted (122aa) NCBI GI: 28212280
Description:

hypothetical protein LOC283579

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          7           1
 C cysteine            2.5          3           1
 D aspartate           4.9          6           1
 E glutamate           8.2         10           1
 F phenylalanine       4.9          6           1
 G glycine             8.2         10           1
 H histidine           5.7          7           1
 I isoleucine          1.6          2           1
 K lysine              3.3          4           2
 L leucine             6.6          8           2
 M methionine          3.3          4           1
 N asparagine          2.5          3           1
 P proline             9.8         12           2
 Q glutamine           4.9          6           2
 R arginine            4.9          6           1
 S serine             11.5         14           2
 T threonine           6.6          8           1
 V valine              3.3          4           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC283579 
ZNF195                0.157   zinc finger protein 195 isoform 2 
ZNF195                0.157   zinc finger protein 195 isoform 1 
C9orf37               0.153   chromosome 9 open reading frame 37 
FLJ25363              0.145   hypothetical protein LOC401082 
STAP2                 0.136   signal transducing adaptor family member 2 isoform 1...
C15orf40              0.132   hypothetical protein LOC123207 isoform d 
LOC100132815          0.123   PREDICTED: hypothetical protein 
LOC100132815          0.123   PREDICTED: hypothetical protein 
LOC100132815          0.123   PREDICTED: hypothetical protein 
LOC100128260          0.115   PREDICTED: hCG_1742852 
LOC100128260          0.115   PREDICTED: hCG_1742852 
LOC100288773          0.111   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.111   PREDICTED: hCG_1742852 
FAM18B2               0.102   hypothetical protein LOC201158 isoform 1 
LOC100294407          0.102   PREDICTED: similar to hCG2039376 
CNGA1                 0.098   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CHEK2                 0.094   protein kinase CHK2 isoform c 
USP19                 0.094   ubiquitin thioesterase 19 
SULT1C2               0.094   sulfotransferase family, cytosolic, 1C, member 1 iso...
UTY                   0.089   tetratricopeptide repeat protein isoform 1 
GPR107                0.089   G protein-coupled receptor 107 isoform 1 
SUGT1                 0.081   suppressor of G2 allele of SKP1 isoform a 
GYG2                  0.072   glycogenin 2 isoform b 
SLC3A2                0.068   solute carrier family 3, member 2 isoform d 
SLC3A2                0.068   solute carrier family 3, member 2 isoform c 
NEK4                  0.064   NIMA-related kinase 4 
DLGAP5                0.064   discs large homolog 7 isoform b 
TPCN1                 0.060   two pore segment channel 1 isoform 1 
REL                   0.060   v-rel reticuloendotheliosis viral oncogene homolog [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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