Guide to the Human Genome
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Name: USP19 Sequence: fasta or formatted (1318aa) NCBI GI: 57529246
Description:

ubiquitin thioesterase 19

Referenced in:

Ubiquitin and Related Protein Modifications
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8        103           3
 C cysteine            2.5         33           1
 D aspartate           5.2         68           2
 E glutamate           7.6        100           7
 F phenylalanine       3.8         50           2
 G glycine             6.6         87           2
 H histidine           2.4         32           2
 I isoleucine          2.4         32           1
 K lysine              4.6         61           3
 L leucine             9.6        126           3
 M methionine          1.2         16           1
 N asparagine          2.7         36           2
 P proline             8.3        110           2
 Q glutamine           4.7         62           2
 R arginine            6.4         85           3
 S serine              8.0        105           3
 T threonine           5.1         67           2
 V valine              7.5         99           3
 W tryptophan          1.4         18           1
 Y tyrosine            2.1         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin thioesterase 19 
USP4                  0.140   ubiquitin specific protease 4 isoform a 
USP4                  0.140   ubiquitin specific protease 4 isoform b 
USP11                 0.137   ubiquitin specific peptidase 11 
USP15                 0.134   ubiquitin specific peptidase 15 
USP32                 0.065   ubiquitin specific protease 32 
USP6                  0.065   ubiquitin specific protease 6 
USP8                  0.058   ubiquitin specific peptidase 8 
USP8                  0.058   ubiquitin specific peptidase 8 
USP8                  0.058   ubiquitin specific peptidase 8 
USP2                  0.048   ubiquitin specific peptidase 2 isoform b 
USP2                  0.047   ubiquitin specific peptidase 2 isoform a 
USP31                 0.046   ubiquitin specific peptidase 31 
USP43                 0.038   ubiquitin specific protease 43 
USP21                 0.037   ubiquitin-specific protease 21 
USP21                 0.037   ubiquitin-specific protease 21 
USP3                  0.028   ubiquitin thiolesterase 3 
USP20                 0.027   ubiquitin specific protease 20 
USP20                 0.027   ubiquitin specific protease 20 
USP20                 0.027   ubiquitin specific protease 20 
USP33                 0.026   ubiquitin specific protease 33 isoform 3 
USP33                 0.026   ubiquitin specific protease 33 isoform 1 
USP33                 0.026   ubiquitin specific protease 33 isoform 2 
USP22                 0.025   ubiquitin thiolesterase 22 
USP27X                0.024   X-linked ubiquitin thioesterase 27 
USP16                 0.024   ubiquitin specific protease 16 isoform b 
USP16                 0.023   ubiquitin specific protease 16 isoform a 
USP16                 0.023   ubiquitin specific protease 16 isoform a 
USP51                 0.023   ubiquitin specific protease 51 
USP45                 0.021   ubiquitin specific peptidase 45 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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