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Search of human proteins with 22538409
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
(395 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens] 810 0.0
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens] 724 0.0
gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens] 724 0.0
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 646 0.0
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 646 0.0
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens] 578 e-165
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens] 422 e-118
gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens] 399 e-111
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens] 392 e-109
gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens] 392 e-109
gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens] 390 e-109
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens] 363 e-100
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens] 358 4e-99
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 63 4e-10
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 63 4e-10
gi|37574731 boule isoform 1 [Homo sapiens] 62 9e-10
gi|14719414 boule isoform 2 [Homo sapiens] 61 2e-09
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 60 4e-09
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 59 6e-09
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 59 6e-09
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 59 6e-09
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 59 8e-09
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 59 1e-08
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 59 1e-08
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 57 2e-08
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 57 2e-08
gi|189181654 deleted in azoospermia [Homo sapiens] 57 3e-08
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens] 57 3e-08
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 57 3e-08
gi|62244004 modulator of estrogen induced transcription isoform ... 56 5e-08
>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
Length = 395
Score = 810 bits (2092), Expect = 0.0
Identities = 395/395 (100%), Positives = 395/395 (100%)
Query: 1 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60
MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
Sbjct: 1 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60
Query: 61 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120
YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
Sbjct: 61 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120
Query: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180
QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
Sbjct: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180
Query: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240
VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
Sbjct: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240
Query: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300
PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
Sbjct: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300
Query: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360
NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA
Sbjct: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360
Query: 361 ADEISCNTSAVTDEFMLPTPTTTHLLQPPPTALVP 395
ADEISCNTSAVTDEFMLPTPTTTHLLQPPPTALVP
Sbjct: 361 ADEISCNTSAVTDEFMLPTPTTTHLLQPPPTALVP 395
>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
Length = 392
Score = 724 bits (1869), Expect = 0.0
Identities = 354/360 (98%), Positives = 355/360 (98%)
Query: 1 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60
MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
Sbjct: 1 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60
Query: 61 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120
YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
Sbjct: 61 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120
Query: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180
QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
Sbjct: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180
Query: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240
VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
Sbjct: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240
Query: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300
PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
Sbjct: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300
Query: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360
NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSD V+ A
Sbjct: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA 360
>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
Length = 418
Score = 724 bits (1869), Expect = 0.0
Identities = 354/360 (98%), Positives = 355/360 (98%)
Query: 1 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60
MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
Sbjct: 1 MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60
Query: 61 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120
YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
Sbjct: 61 YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120
Query: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180
QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
Sbjct: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180
Query: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240
VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
Sbjct: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240
Query: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300
PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
Sbjct: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300
Query: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360
NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSD V+ A
Sbjct: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA 360
>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 646 bits (1666), Expect = 0.0
Identities = 317/333 (95%), Positives = 322/333 (96%), Gaps = 1/333 (0%)
Query: 28 IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 8 LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
Query: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
Query: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL
Sbjct: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 247
Query: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+ YG
Sbjct: 248 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 307
Query: 328 KLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360
+ GGYAAYRYAQPTPATAAAYSD V+ A
Sbjct: 308 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAA 339
>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 646 bits (1666), Expect = 0.0
Identities = 317/333 (95%), Positives = 322/333 (96%), Gaps = 1/333 (0%)
Query: 28 IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 8 LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
Query: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
Query: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL
Sbjct: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 247
Query: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+ YG
Sbjct: 248 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 307
Query: 328 KLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360
+ GGYAAYRYAQPTPATAAAYSD V+ A
Sbjct: 308 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAA 339
>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
Length = 370
Score = 578 bits (1490), Expect = e-165
Identities = 289/333 (86%), Positives = 295/333 (88%), Gaps = 28/333 (8%)
Query: 28 IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 8 LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
Query: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
Query: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY
Sbjct: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY----------------------- 224
Query: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
A+PGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+ YG
Sbjct: 225 ----AVPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 280
Query: 328 KLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360
+ GGYAAYRYAQPTPATAAAYSD V+ A
Sbjct: 281 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAA 312
>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
Length = 312
Score = 422 bits (1085), Expect = e-118
Identities = 225/326 (69%), Positives = 242/326 (74%), Gaps = 35/326 (10%)
Query: 41 MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 98
MAQPY AQ+ PP QNGIPAEY P PHP +Y+GQT VP EH + LY PAQTH EQ +
Sbjct: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
Query: 99 DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 156
+ S Q ++GT T QTD+AA TD QP PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 61 EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118
Query: 157 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 216
FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178
Query: 217 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF 276
TNKKT NPYTNGWKLNPVVGAVY PEFYA T GF
Sbjct: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------------------------GF 211
Query: 277 PYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAA 336
PYP A AYRGAHLRGRGR VYNTFRAA PPPPIP YG VVYQ+ YG + + GGYAA
Sbjct: 212 PYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAE-IYGGYAA 270
Query: 337 YRYAQPTPATAAAYSDRNQFVFVAAD 362
YRYAQP A AAAYSD V+ AAD
Sbjct: 271 YRYAQPA-AAAAAYSDSYGRVYAAAD 295
>gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]
Length = 451
Score = 399 bits (1025), Expect = e-111
Identities = 227/353 (64%), Positives = 245/353 (69%), Gaps = 32/353 (9%)
Query: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
Query: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Q H EQS S T +G+ TQT+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 134 STQAHGEQS--SNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 191
Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 192 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 251
Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 252 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 309
Query: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 310 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 368
Query: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDRNQFVFVA 360
GVVYQ+ YG L GGYAAYRYAQP AT AAAYSD V+ A
Sbjct: 369 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTA 420
>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
Length = 450
Score = 392 bits (1008), Expect = e-109
Identities = 226/353 (64%), Positives = 242/353 (68%), Gaps = 33/353 (9%)
Query: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
Query: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190
Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250
Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 308
Query: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 309 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 367
Query: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDRNQFVFVA 360
GVVYQ+ YG L GGYAAYRYAQP AT AAAYSD V+ A
Sbjct: 368 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTA 419
>gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]
Length = 380
Score = 392 bits (1008), Expect = e-109
Identities = 226/353 (64%), Positives = 242/353 (68%), Gaps = 33/353 (9%)
Query: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
Query: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297
Query: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDRNQFVFVA 360
GVVYQ+ YG L GGYAAYRYAQP AT AAAYSD V+ A
Sbjct: 298 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTA 349
>gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]
Length = 376
Score = 390 bits (1003), Expect = e-109
Identities = 225/349 (64%), Positives = 240/349 (68%), Gaps = 29/349 (8%)
Query: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
Query: 267 ------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVV 319
+PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY GVV
Sbjct: 239 GRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPGVV 297
Query: 320 YQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDRNQFVFVA 360
YQ+ YG L GGYAAYRYAQP AT AAAYSD V+ A
Sbjct: 298 YQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTA 345
>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
Length = 367
Score = 363 bits (932), Expect = e-100
Identities = 207/330 (62%), Positives = 224/330 (67%), Gaps = 19/330 (5%)
Query: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Q H EQS S T +G+ TQT+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQS--SNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 121
Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 122 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 181
Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 182 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 239
Query: 267 ------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVV 319
+PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY GV
Sbjct: 240 GRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPGVD 298
Query: 320 YQEPVYGNKLLQGGYAAYRYAQPTPATAAA 349
Q + LLQ + QP T A
Sbjct: 299 MQPTDMHSLLLQPQPPLLQPLQPLTVTVMA 328
>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
Length = 370
Score = 358 bits (920), Expect = 4e-99
Identities = 207/334 (61%), Positives = 223/334 (66%), Gaps = 24/334 (7%)
Query: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
Query: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297
Query: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAA 349
GV Q + LLQ + QP T A
Sbjct: 298 PGVDMQPTDMHSLLLQPQPPLLQPLQPLTVTVMA 331
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 63.2 bits (152), Expect = 4e-10
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 47/257 (18%)
Query: 104 TVSGTATQTDDAAPTDGQPQ-TQPSENTE-----NKSQPKRLHVSNIPFRFRDPDLRQMF 157
T+ G P QP+ T+P E + + S+ ++ V IP + +LR+ F
Sbjct: 74 TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133
Query: 158 GQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 215
+FG + +V +I++ ++ +GFGF+TFE+ D+A +H + G+K+EV A R
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAEPRD 192
Query: 216 MTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPG 275
++ P + W V A +AG P + G
Sbjct: 193 SKSQAPGQPGASQWGSRVVPNAANG---WAG---------------QPPPTWQQGYGPQG 234
Query: 276 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQG--- 332
PA A Y G GRG APPPP P + + P G QG
Sbjct: 235 MWVPAGQAIGGY-GPPPAGRG----------APPPP-PPFTSYIVSTPPGGFPPPQGFPQ 282
Query: 333 GYAA-----YRYAQPTP 344
GY A + Y P P
Sbjct: 283 GYGAPPQFSFGYGPPPP 299
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 63.2 bits (152), Expect = 4e-10
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 47/257 (18%)
Query: 104 TVSGTATQTDDAAPTDGQPQ-TQPSENTE-----NKSQPKRLHVSNIPFRFRDPDLRQMF 157
T+ G P QP+ T+P E + + S+ ++ V IP + +LR+ F
Sbjct: 74 TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133
Query: 158 GQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 215
+FG + +V +I++ ++ +GFGF+TFE+ D+A +H + G+K+EV A R
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAEPRD 192
Query: 216 MTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPG 275
++ P + W V A +AG P + G
Sbjct: 193 SKSQAPGQPGASQWGSRVVPNAANG---WAG---------------QPPPTWQQGYGPQG 234
Query: 276 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQG--- 332
PA A Y G GRG APPPP P + + P G QG
Sbjct: 235 MWVPAGQAIGGY-GPPPAGRG----------APPPP-PPFTSYIVSTPPGGFPPPQGFPQ 282
Query: 333 GYAA-----YRYAQPTP 344
GY A + Y P P
Sbjct: 283 GYGAPPQFSFGYGPPPP 299
>gi|37574731 boule isoform 1 [Homo sapiens]
Length = 295
Score = 62.0 bits (149), Expect = 9e-10
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 103 QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 153
+T SG T QTD +P+ P N + + P R+ V I F+ + DL
Sbjct: 2 ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
Query: 154 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 211
R+ F Q+G + +V+I+ + G SKG+GFVTFE DA + ++ + +K+ + A
Sbjct: 62 RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
>gi|14719414 boule isoform 2 [Homo sapiens]
Length = 283
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 111 QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDLRQMFGQFGKILD 165
QTD +P+ P N + + P R+ V I F+ + DLR+ F Q+G + +
Sbjct: 2 QTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKE 61
Query: 166 VEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 211
V+I+ + G SKG+GFVTFE DA + ++ + +K+ + A
Sbjct: 62 VKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 108
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 59.7 bits (143), Expect = 4e-09
Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 10/218 (4%)
Query: 13 GVPMIVPAA---PYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPA 69
GVP P A P P + G P P+ G + P HP
Sbjct: 173 GVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPK 232
Query: 70 PEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSEN 129
P + G P +PP Q P S + + +P E
Sbjct: 233 PPHRGGGE-PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEK 291
Query: 130 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 189
T +Q RL V N+P + + +++F ++G+ E+ N+ KGFGF+ E+ A A
Sbjct: 292 TY--TQRCRLFVGNLPADITEDEFKRLFAKYGE--PGEVFINK--GKGFGFIKLESRALA 345
Query: 190 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 227
+ A+ +L T + GR++ V AT + + ++PY +
Sbjct: 346 EIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVS 383
Score = 28.9 bits (63), Expect = 8.5
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREK 195
L V N+ + L + F QFG I +I ++RG S G G V F + A +A E+
Sbjct: 373 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 430
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 59.3 bits (142), Expect = 6e-09
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 95 QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 151
Q AD + + ++G +D G+ +++ E ++ K +++ N D
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 152 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 210
L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++G + G+ I V
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 211 ATARV 215
A +V
Sbjct: 266 AQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 133 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 192
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 193 REKLHGTVVEGRKIEVNNATAR 214
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 132 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 191
++ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348
Query: 192 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 225
A +++G +V + + V A + N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 37.0 bits (84), Expect = 0.031
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 196
L+V ++ + L + F G +L + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 197 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 253
+ V++G+ I + + K V N + + A+Y G +L C+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 254 NQEGSSMYS 262
++ GS Y+
Sbjct: 133 DENGSKGYA 141
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 59.3 bits (142), Expect = 6e-09
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 95 QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 151
Q AD + + ++G +D G+ +++ E ++ K +++ N D
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 152 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 210
L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++G + G+ I V
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 211 ATARV 215
A +V
Sbjct: 266 AQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 133 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 192
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 193 REKLHGTVVEGRKIEVNNATAR 214
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 132 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 191
++ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348
Query: 192 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 225
A +++G +V + + V A + N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 37.0 bits (84), Expect = 0.031
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 196
L+V ++ + L + F G +L + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 197 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 253
+ V++G+ I + + K V N + + A+Y G +L C+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 254 NQEGSSMYS 262
++ GS Y+
Sbjct: 133 DENGSKGYA 141
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 59.3 bits (142), Expect = 6e-09
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 95 QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 151
Q AD + + ++G +D G+ +++ E ++ K +++ N D
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 152 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 210
L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++G + G+ I V
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 211 ATARV 215
A +V
Sbjct: 266 AQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 133 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 192
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 193 REKLHGTVVEGRKIEVNNATAR 214
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 132 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 191
++ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348
Query: 192 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 225
A +++G +V + + V A + N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 37.0 bits (84), Expect = 0.031
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 196
L+V ++ + L + F G +L + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 197 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 253
+ V++G+ I + + K V N + + A+Y G +L C+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 254 NQEGSSMYS 262
++ GS Y+
Sbjct: 133 DENGSKGYA 141
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 8e-09
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 120 GQPQTQPSENTENKSQPKR---LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-S 175
GQ +++ E ++ K +++ N D L+ +FG+FG L V+++ +E G S
Sbjct: 171 GQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 230
Query: 176 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 215
KGFGFV+FE DA +A ++++G + G++I V A +V
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Score = 55.8 bits (133), Expect = 6e-08
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 133 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 192
KS + V N+ + L FG IL ++ +E GSKG+GFV FE A+RA
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERA 154
Query: 193 REKLHGTVVEGRKIEVNNATAR 214
+K++G ++ GRK+ V +R
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSR 176
Score = 51.2 bits (121), Expect = 2e-06
Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 12/193 (6%)
Query: 125 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 184
Q ++ + Q L+V N+ D LR+ F FG I +++ SKGFGFV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 185 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY 244
+ +A +A +++G +V + + V A + N Y V +P
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP-- 399
Query: 245 AGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF------PYPAATAAAAYRGAHLRGRGRT 298
+G + + + Y PS + P + P+P +A R G R
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIR----PGAPRV 455
Query: 299 VYNTFRAAAPPPP 311
++T R A+ P
Sbjct: 456 PFSTMRPASSQVP 468
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 58.5 bits (140), Expect = 1e-08
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 122 PQTQPSENTENKSQPKR---LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSK 176
P + + N++ P L V + + DLR++F ++G I DV I++++ R S+
Sbjct: 100 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159
Query: 177 GFGFVTFENSADADRAREKLHGTVVEGRKIEVN 209
GF FV FEN DA A+E+ +G ++GR+I V+
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 58.5 bits (140), Expect = 1e-08
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 197
+++ N D L+ +FG+FG L V+++ +E G SKGFGFV+FE DA +A ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 198 GTVVEGRKIEVNNATARV 215
G + G++I V A +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270
Score = 57.0 bits (136), Expect = 3e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 133 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 192
KS + + N+ + L F FG IL +++ +E GSKG+GFV FE A+RA
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 193 REKLHGTVVEGRKIEVNNATAR 214
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 54.7 bits (130), Expect = 1e-07
Identities = 57/233 (24%), Positives = 89/233 (38%), Gaps = 23/233 (9%)
Query: 125 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 184
Q ++ + Q L+V N+ D LR+ F FG I +++ SKGFGFV F
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 185 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKL-----NPVVGAVY 239
+ +A +A +++G +V + + V A + N Y NPV+ Y
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP-Y 400
Query: 240 SPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTV 299
P +G + + + Y PS + P + A A + ++ G
Sbjct: 401 QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRW---TAQGARPHPFQNMPG----- 452
Query: 300 YNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQ---PTPATAAA 349
R AAP PP Q P +++ A Q P PA AAA
Sbjct: 453 --AIRPAAPRPPFSTMRPASSQVP----RVMSTQRVANTSTQTMGPRPAAAAA 499
Score = 35.8 bits (81), Expect = 0.069
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 196
L+V ++ + L + F G IL + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 197 HGTVVEGRKIEV 208
+ V++G+ + +
Sbjct: 73 NFDVIKGKPVRI 84
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 136 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 193
P RL+V ++ F + LR +F FG+I ++++ + E G SKG+GF+TF +S A +A
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 194 EKLHGTVVEGRKIEVNNATAR 214
E+L+G + GR ++V + T R
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 136 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 193
P RL+V ++ F + LR +F FG+I ++++ + E G SKG+GF+TF +S A +A
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 194 EKLHGTVVEGRKIEVNNATAR 214
E+L+G + GR ++V + T R
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329
>gi|189181654 deleted in azoospermia [Homo sapiens]
Length = 744
Score = 57.0 bits (136), Expect = 3e-08
Identities = 76/291 (26%), Positives = 114/291 (39%), Gaps = 52/291 (17%)
Query: 65 HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 117
+P P P++ P L P P H + + +T T+S A TQ+ AA
Sbjct: 297 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 356
Query: 118 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 176
+ G E K P + V I R + ++ FG++G + +V+II N G SK
Sbjct: 357 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 410
Query: 177 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 224
G+GFV+F N D +K+ G+ + G+K+++ A + V VNP
Sbjct: 411 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 466
Query: 225 --YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS-------LVYT-SAMP 274
+ N W+ NP P+ V Q Q S+ +P LVY P
Sbjct: 467 PQFQNVWR-NPNTETYLQPQITPNPV--TQHVQAYSAYPHSPGQVITGCQLLVYNYQEYP 523
Query: 275 GFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVY 325
+P A Y+ VYN ++ P P YQ PVY
Sbjct: 524 TYPDSAFQVTTGYQ--------LPVYN-YQPFPAYPRSPFQVTAGYQLPVY 565
Score = 56.2 bits (134), Expect = 5e-08
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 42/260 (16%)
Query: 65 HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 117
+P P P++ P L P P H + + +T T+S A TQ+ AA
Sbjct: 132 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 191
Query: 118 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 176
+ G E K P + V I R + ++ FG++G + +V+II N G SK
Sbjct: 192 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 245
Query: 177 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 224
G+GFV+F N D +K+ G+ + G+K+++ A + V VNP
Sbjct: 246 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 301
Query: 225 --YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAAT 282
+ N W+ NP P+ V + + ++ P+S + A ++
Sbjct: 302 PQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPETPNSTISREAS-----TQSS 352
Query: 283 AAAAYRGAHLRGRGRTVYNT 302
+AAA +G L G+ V NT
Sbjct: 353 SAAASQGWVL-PEGKIVPNT 371
Score = 52.4 bits (124), Expect = 7e-07
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 36/220 (16%)
Query: 99 DTSAQTVSGTA-TQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 157
+T T+S A TQ+ AA + G E K P + V I R + ++ F
Sbjct: 7 ETPNSTISREASTQSSSAAASQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCF 60
Query: 158 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 214
G++G + +V+II N G SKG+GFV+F N D +K+ G+ + G+K+++ A +
Sbjct: 61 GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116
Query: 215 -------VMTNKKTVNP-----YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYS 262
V VNP + N W+ NP P+ V + + ++
Sbjct: 117 QKLCARHVQPRPLVVNPPPPPQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPE 172
Query: 263 APSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNT 302
P+S + A +++AAA +G L G+ V NT
Sbjct: 173 TPNSTISREAS-----TQSSSAAASQGWVL-PEGKIVPNT 206
>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
Length = 579
Score = 57.0 bits (136), Expect = 3e-08
Identities = 76/291 (26%), Positives = 114/291 (39%), Gaps = 52/291 (17%)
Query: 65 HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 117
+P P P++ P L P P H + + +T T+S A TQ+ AA
Sbjct: 132 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 191
Query: 118 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 176
+ G E K P + V I R + ++ FG++G + +V+II N G SK
Sbjct: 192 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 245
Query: 177 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 224
G+GFV+F N D +K+ G+ + G+K+++ A + V VNP
Sbjct: 246 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 301
Query: 225 --YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS-------LVYT-SAMP 274
+ N W+ NP P+ V Q Q S+ +P LVY P
Sbjct: 302 PQFQNVWR-NPNTETYLQPQITPNPV--TQHVQAYSAYPHSPGQVITGCQLLVYNYQEYP 358
Query: 275 GFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVY 325
+P A Y+ VYN ++ P P YQ PVY
Sbjct: 359 TYPDSAFQVTTGYQ--------LPVYN-YQPFPAYPRSPFQVTAGYQLPVY 400
Score = 52.4 bits (124), Expect = 7e-07
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 36/220 (16%)
Query: 99 DTSAQTVSGTA-TQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 157
+T T+S A TQ+ AA + G E K P + V I R + ++ F
Sbjct: 7 ETPNSTISREASTQSSSAAASQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCF 60
Query: 158 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 214
G++G + +V+II N G SKG+GFV+F N D +K+ G+ + G+K+++ A +
Sbjct: 61 GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116
Query: 215 -------VMTNKKTVNP-----YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYS 262
V VNP + N W+ NP P+ V + + ++
Sbjct: 117 QKLCARHVQPRPLVVNPPPPPQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPE 172
Query: 263 APSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNT 302
P+S + A +++AAA +G L G+ V NT
Sbjct: 173 TPNSTISREAS-----TQSSSAAASQGWVL-PEGKIVPNT 206
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 57.0 bits (136), Expect = 3e-08
Identities = 63/224 (28%), Positives = 90/224 (40%), Gaps = 36/224 (16%)
Query: 4 SQGVLLHPYGVPMI-------VPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNG 56
S GV P + I +PA P P +P + AP NG
Sbjct: 267 SPGVAFSPCHIQQIGAVSLNGLPATPIAPA------SGLHSPPLLGTTAVPGLVAPITNG 320
Query: 57 IPAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSP--ADTSAQTVSGTATQT-- 112
P HPA E TV + L YP QSP A+T SG T
Sbjct: 321 FAGVVPFPGGHPALE-----TVYANGLVPYPA------QSPTVAETLHPAFSGVQQYTAM 369
Query: 113 -DDAAPTD---GQPQTQPSENTENKSQPK--RLHVSNIPFRFRDPDLRQMFGQFGKILDV 166
AA T PQ P + + P+ L + ++P F D +L QMF FG I+
Sbjct: 370 YPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISS 429
Query: 167 EIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 208
++ + SK FGFV+F+N A A A + ++G + ++++V
Sbjct: 430 KVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 473
Score = 38.1 bits (87), Expect = 0.014
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 108 TATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV 166
TA P +P Q +P+++ + ++L V + + + D+ ++F FG I +
Sbjct: 104 TALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDEC 163
Query: 167 EIIFNERGS-KGFGFVTFENSADADRAREKLHGT 199
++ GS KG FV F + +A A LHG+
Sbjct: 164 TVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 197
Score = 33.5 bits (75), Expect = 0.34
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 138 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS--KGFGFVTFENSADADRAREK 195
+L V IP + DL+ +F QFG+I ++ ++ + KG F+T+ A +A+
Sbjct: 46 KLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTA 105
Query: 196 LH 197
LH
Sbjct: 106 LH 107
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 56.2 bits (134), Expect = 5e-08
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 96 SPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQ 155
S S Q S + D + + S + + S K + VS + + DL+
Sbjct: 325 SSTGASGQAKSSSKESKDSKTSSKDDKGSTSSTSGSSGSSTKNIWVSGLSSNTKAADLKN 384
Query: 156 MFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 208
+FG++GK+L +++ N R G+K +G VT +S + R LH T + G+ I V
Sbjct: 385 LFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLISV 439
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,459,036
Number of Sequences: 37866
Number of extensions: 1024397
Number of successful extensions: 5058
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 4048
Number of HSP's gapped (non-prelim): 1084
length of query: 395
length of database: 18,247,518
effective HSP length: 104
effective length of query: 291
effective length of database: 14,309,454
effective search space: 4164051114
effective search space used: 4164051114
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.