Search of human proteins with 22538405

Search of human proteins with 22538405

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
         (418 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]       858   0.0  
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]       794   0.0  
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]      780   0.0  
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]       780   0.0  
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]       724   0.0  
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]      712   0.0  
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]      457   e-128
gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]     450   e-126
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]     443   e-124
gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]      443   e-124
gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]     441   e-124
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]       363   e-100
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]     358   4e-99
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]          63   4e-10
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]          63   4e-10
gi|37574731 boule isoform 1 [Homo sapiens]                             62   1e-09
gi|14719414 boule isoform 2 [Homo sapiens]                             61   2e-09
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    60   5e-09
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    59   6e-09
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    59   6e-09
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    59   6e-09
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]      59   8e-09
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     59   1e-08
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]      59   1e-08
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]       57   2e-08
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]      57   2e-08
gi|189181654 deleted in azoospermia [Homo sapiens]                     57   3e-08
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]          57   3e-08
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa...    57   3e-08
gi|188219593 TIA1 protein isoform 1 [Homo sapiens]                     56   5e-08

>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
          Length = 418

 Score =  858 bits (2216), Expect = 0.0
 Identities = 418/418 (100%), Positives = 418/418 (100%)

Query: 1   MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60
           MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
Sbjct: 1   MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60

Query: 61  YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120
           YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
Sbjct: 61  YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120

Query: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180
           QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
Sbjct: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180

Query: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240
           VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
Sbjct: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240

Query: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300
           PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
Sbjct: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300

Query: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA 360
           NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
Sbjct: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA 360

Query: 361 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
           DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 361 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418


>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
          Length = 392

 Score =  794 bits (2051), Expect = 0.0
 Identities = 392/418 (93%), Positives = 392/418 (93%), Gaps = 26/418 (6%)

Query: 1   MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60
           MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
Sbjct: 1   MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60

Query: 61  YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120
           YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
Sbjct: 61  YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120

Query: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180
           QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
Sbjct: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180

Query: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240
           VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
Sbjct: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240

Query: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300
           PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
Sbjct: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300

Query: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA 360
           NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA
Sbjct: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA 360

Query: 361 DPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
           DPYHHALAPAPTYGVGAM                          ASIYRGGYNRFAPY
Sbjct: 361 DPYHHALAPAPTYGVGAM--------------------------ASIYRGGYNRFAPY 392


>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
          Length = 397

 Score =  780 bits (2013), Expect = 0.0
 Identities = 381/391 (97%), Positives = 385/391 (98%), Gaps = 1/391 (0%)

Query: 28  IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
           ++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 8   LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67

Query: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
           PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127

Query: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
           FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187

Query: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
           VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL
Sbjct: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 247

Query: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
           VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+  YG 
Sbjct: 248 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 307

Query: 328 KLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 387
             + GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA
Sbjct: 308 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 366

Query: 388 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
           KTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 367 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397


>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
          Length = 397

 Score =  780 bits (2013), Expect = 0.0
 Identities = 381/391 (97%), Positives = 385/391 (98%), Gaps = 1/391 (0%)

Query: 28  IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
           ++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 8   LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67

Query: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
           PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127

Query: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
           FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187

Query: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
           VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL
Sbjct: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 247

Query: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
           VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+  YG 
Sbjct: 248 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 307

Query: 328 KLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 387
             + GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA
Sbjct: 308 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 366

Query: 388 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
           KTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 367 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397


>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
          Length = 395

 Score =  724 bits (1869), Expect = 0.0
 Identities = 354/360 (98%), Positives = 355/360 (98%)

Query: 1   MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60
           MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE
Sbjct: 1   MLASQGVLLHPYGVPMIVPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAE 60

Query: 61  YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120
           YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG
Sbjct: 61  YTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG 120

Query: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180
           QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF
Sbjct: 121 QPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGF 180

Query: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240
           VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS
Sbjct: 181 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYS 240

Query: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300
           PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY
Sbjct: 241 PEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVY 300

Query: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAA 360
           NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSD    V+ A
Sbjct: 301 NTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360


>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
          Length = 370

 Score =  712 bits (1837), Expect = 0.0
 Identities = 353/391 (90%), Positives = 358/391 (91%), Gaps = 28/391 (7%)

Query: 28  IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
           ++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 8   LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67

Query: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
           PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127

Query: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
           FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187

Query: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
           VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY                       
Sbjct: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY----------------------- 224

Query: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
               A+PGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+  YG 
Sbjct: 225 ----AVPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 280

Query: 328 KLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 387
             + GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA
Sbjct: 281 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 339

Query: 388 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
           KTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 340 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370


>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
          Length = 312

 Score =  457 bits (1175), Expect = e-128
 Identities = 240/343 (69%), Positives = 258/343 (75%), Gaps = 36/343 (10%)

Query: 41  MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 98
           MAQPY  AQ+ PP QNGIPAEY  P PHP  +Y+GQT VP EH + LY PAQTH EQ  +
Sbjct: 1   MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60

Query: 99  DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 156
           + S Q ++GT T  QTD+AA TD QP   PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 61  EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118

Query: 157 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 216
           FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178

Query: 217 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF 276
           TNKKT NPYTNGWKLNPVVGAVY PEFYA T                           GF
Sbjct: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------------------------GF 211

Query: 277 PYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAA 336
           PYP    A AYRGAHLRGRGR VYNTFRAA PPPPIP YG VVYQ+  YG + + GGYAA
Sbjct: 212 PYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAE-IYGGYAA 270

Query: 337 YRYAQPTPATAAAYSDSYGRVY-AADPYHHALAPAPTYGVGAM 378
           YRYAQP  A AAAYSDSYGRVY AADPYHH + PA TY +G M
Sbjct: 271 YRYAQPA-AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312


>gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]
          Length = 451

 Score =  450 bits (1157), Expect = e-126
 Identities = 257/411 (62%), Positives = 278/411 (67%), Gaps = 59/411 (14%)

Query: 29  QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
           QGNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 79  QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133

Query: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
             Q H EQS    S  T +G+ TQT+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 134 STQAHGEQS--SNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 191

Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 192 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 251

Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 252 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 309

Query: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
                     L+    +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY
Sbjct: 310 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 368

Query: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHAL 367
            GVVYQ+  YG   L GGYAAYRYAQP  AT        AAAYSD YGRVY ADPY HAL
Sbjct: 369 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HAL 426

Query: 368 APAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
           APA +YGVGA+                          AS+YRGGY+RFAPY
Sbjct: 427 APAASYGVGAV--------------------------ASLYRGGYSRFAPY 451


>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
          Length = 450

 Score =  443 bits (1140), Expect = e-124
 Identities = 256/411 (62%), Positives = 275/411 (66%), Gaps = 60/411 (14%)

Query: 29  QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
           QGNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 79  QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133

Query: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
             Q H EQS    S Q  S T   T+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190

Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250

Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 308

Query: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
                     L+    +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY
Sbjct: 309 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 367

Query: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHAL 367
            GVVYQ+  YG   L GGYAAYRYAQP  AT        AAAYSD YGRVY ADPY HAL
Sbjct: 368 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HAL 425

Query: 368 APAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
           APA +YGVGA+                          AS+YRGGY+RFAPY
Sbjct: 426 APAASYGVGAV--------------------------ASLYRGGYSRFAPY 450


>gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]
          Length = 380

 Score =  443 bits (1140), Expect = e-124
 Identities = 256/411 (62%), Positives = 275/411 (66%), Gaps = 60/411 (14%)

Query: 29  QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
           QGNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 9   QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63

Query: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
             Q H EQS    S Q  S T   T+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64  STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120

Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180

Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238

Query: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
                     L+    +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY
Sbjct: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297

Query: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHAL 367
            GVVYQ+  YG   L GGYAAYRYAQP  AT        AAAYSD YGRVY ADPY HAL
Sbjct: 298 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HAL 355

Query: 368 APAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
           APA +YGVGA+                          AS+YRGGY+RFAPY
Sbjct: 356 APAASYGVGAV--------------------------ASLYRGGYSRFAPY 380


>gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]
          Length = 376

 Score =  441 bits (1135), Expect = e-124
 Identities = 255/407 (62%), Positives = 273/407 (67%), Gaps = 56/407 (13%)

Query: 29  QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
           QGNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 9   QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63

Query: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
             Q H EQS    S Q  S T   T+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64  STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120

Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180

Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238

Query: 267 ------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVV 319
                       +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY GVV
Sbjct: 239 GRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPGVV 297

Query: 320 YQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALAPAP 371
           YQ+  YG   L GGYAAYRYAQP  AT        AAAYSD YGRVY ADPY HALAPA 
Sbjct: 298 YQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALAPAA 355

Query: 372 TYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
           +YGVGA+                          AS+YRGGY+RFAPY
Sbjct: 356 SYGVGAV--------------------------ASLYRGGYSRFAPY 376


>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
          Length = 367

 Score =  363 bits (932), Expect = e-100
 Identities = 207/330 (62%), Positives = 224/330 (67%), Gaps = 19/330 (5%)

Query: 29  QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
           QGNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 9   QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63

Query: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
             Q H EQS    S  T +G+ TQT+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64  STQAHGEQS--SNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 121

Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 122 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 181

Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 182 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 239

Query: 267 ------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVV 319
                       +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY GV 
Sbjct: 240 GRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPGVD 298

Query: 320 YQEPVYGNKLLQGGYAAYRYAQPTPATAAA 349
            Q     + LLQ      +  QP   T  A
Sbjct: 299 MQPTDMHSLLLQPQPPLLQPLQPLTVTVMA 328


>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
          Length = 370

 Score =  358 bits (920), Expect = 4e-99
 Identities = 207/334 (61%), Positives = 223/334 (66%), Gaps = 24/334 (7%)

Query: 29  QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
           QGNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 9   QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63

Query: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
             Q H EQS    S Q  S T   T+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64  STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120

Query: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180

Query: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238

Query: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
                     L+    +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY
Sbjct: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297

Query: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPATAAA 349
            GV  Q     + LLQ      +  QP   T  A
Sbjct: 298 PGVDMQPTDMHSLLLQPQPPLLQPLQPLTVTVMA 331


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 47/257 (18%)

Query: 104 TVSGTATQTDDAAPTDGQPQ-TQPSENTE-----NKSQPKRLHVSNIPFRFRDPDLRQMF 157
           T+ G         P   QP+ T+P E  +     + S+  ++ V  IP    + +LR+ F
Sbjct: 74  TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133

Query: 158 GQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 215
            +FG + +V +I++  ++  +GFGF+TFE+    D+A   +H   + G+K+EV  A  R 
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAEPRD 192

Query: 216 MTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPG 275
             ++    P  + W    V  A      +AG                 P +        G
Sbjct: 193 SKSQAPGQPGASQWGSRVVPNAANG---WAG---------------QPPPTWQQGYGPQG 234

Query: 276 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQG--- 332
              PA  A   Y G    GRG          APPPP P +   +   P  G    QG   
Sbjct: 235 MWVPAGQAIGGY-GPPPAGRG----------APPPP-PPFTSYIVSTPPGGFPPPQGFPQ 282

Query: 333 GYAA-----YRYAQPTP 344
           GY A     + Y  P P
Sbjct: 283 GYGAPPQFSFGYGPPPP 299


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 47/257 (18%)

Query: 104 TVSGTATQTDDAAPTDGQPQ-TQPSENTE-----NKSQPKRLHVSNIPFRFRDPDLRQMF 157
           T+ G         P   QP+ T+P E  +     + S+  ++ V  IP    + +LR+ F
Sbjct: 74  TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133

Query: 158 GQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 215
            +FG + +V +I++  ++  +GFGF+TFE+    D+A   +H   + G+K+EV  A  R 
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAEPRD 192

Query: 216 MTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPG 275
             ++    P  + W    V  A      +AG                 P +        G
Sbjct: 193 SKSQAPGQPGASQWGSRVVPNAANG---WAG---------------QPPPTWQQGYGPQG 234

Query: 276 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQG--- 332
              PA  A   Y G    GRG          APPPP P +   +   P  G    QG   
Sbjct: 235 MWVPAGQAIGGY-GPPPAGRG----------APPPP-PPFTSYIVSTPPGGFPPPQGFPQ 282

Query: 333 GYAA-----YRYAQPTP 344
           GY A     + Y  P P
Sbjct: 283 GYGAPPQFSFGYGPPPP 299


>gi|37574731 boule isoform 1 [Homo sapiens]
          Length = 295

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 103 QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 153
           +T SG  T    QTD  +P+       P  N  +  +     P R+ V  I F+  + DL
Sbjct: 2   ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61

Query: 154 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 211
           R+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 62  RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120


>gi|14719414 boule isoform 2 [Homo sapiens]
          Length = 283

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 111 QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDLRQMFGQFGKILD 165
           QTD  +P+       P  N  +  +     P R+ V  I F+  + DLR+ F Q+G + +
Sbjct: 2   QTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKE 61

Query: 166 VEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 211
           V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 62  VKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 108


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 10/218 (4%)

Query: 13  GVPMIVPAA---PYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPA 69
           GVP   P A   P  P  + G             P        P+ G     + P  HP 
Sbjct: 173 GVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPK 232

Query: 70  PEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSEN 129
           P + G    P      +PP      Q P        S       +    +     +P E 
Sbjct: 233 PPHRGGGE-PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEK 291

Query: 130 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 189
           T   +Q  RL V N+P    + + +++F ++G+    E+  N+   KGFGF+  E+ A A
Sbjct: 292 TY--TQRCRLFVGNLPADITEDEFKRLFAKYGE--PGEVFINK--GKGFGFIKLESRALA 345

Query: 190 DRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 227
           + A+ +L  T + GR++ V  AT     + + ++PY +
Sbjct: 346 EIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVS 383



 Score = 28.9 bits (63), Expect = 9.1
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREK 195
           L V N+     +  L + F QFG I    +I ++RG S G G V F +   A +A E+
Sbjct: 373 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 430


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)

Query: 95  QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 151
           Q  AD + + ++G     +D     G+ +++     E  ++ K    +++ N      D 
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205

Query: 152 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 210
            L+++F QFGK L V+++ +  G SKGFGFV++E   DA++A E+++G  + G+ I V  
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265

Query: 211 ATARV 215
           A  +V
Sbjct: 266 AQKKV 270



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query: 133 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 192
           KS    + + N+     +  L   F  FG IL  +++ +E GSKG+ FV FE    AD+A
Sbjct: 95  KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154

Query: 193 REKLHGTVVEGRKIEVNNATAR 214
            EK++G ++  RK+ V    +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 132 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 191
           ++ Q   L++ N+     D  LR+ F  FG I   +++  +  SKGFGFV F +  +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348

Query: 192 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 225
           A  +++G +V  + + V  A  +        N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382



 Score = 37.0 bits (84), Expect = 0.033
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 196
           L+V ++     +  L + F   G +L + +  +   R S G+ +V F+  ADA+RA + +
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 197 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 253
           +  V++G+ I +  +       K  V N +      +    A+Y      G +L C+   
Sbjct: 73  NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132

Query: 254 NQEGSSMYS 262
           ++ GS  Y+
Sbjct: 133 DENGSKGYA 141


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)

Query: 95  QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 151
           Q  AD + + ++G     +D     G+ +++     E  ++ K    +++ N      D 
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205

Query: 152 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 210
            L+++F QFGK L V+++ +  G SKGFGFV++E   DA++A E+++G  + G+ I V  
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265

Query: 211 ATARV 215
           A  +V
Sbjct: 266 AQKKV 270



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query: 133 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 192
           KS    + + N+     +  L   F  FG IL  +++ +E GSKG+ FV FE    AD+A
Sbjct: 95  KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154

Query: 193 REKLHGTVVEGRKIEVNNATAR 214
            EK++G ++  RK+ V    +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 132 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 191
           ++ Q   L++ N+     D  LR+ F  FG I   +++  +  SKGFGFV F +  +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348

Query: 192 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 225
           A  +++G +V  + + V  A  +        N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382



 Score = 37.0 bits (84), Expect = 0.033
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 196
           L+V ++     +  L + F   G +L + +  +   R S G+ +V F+  ADA+RA + +
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 197 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 253
           +  V++G+ I +  +       K  V N +      +    A+Y      G +L C+   
Sbjct: 73  NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132

Query: 254 NQEGSSMYS 262
           ++ GS  Y+
Sbjct: 133 DENGSKGYA 141


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)

Query: 95  QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 151
           Q  AD + + ++G     +D     G+ +++     E  ++ K    +++ N      D 
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205

Query: 152 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 210
            L+++F QFGK L V+++ +  G SKGFGFV++E   DA++A E+++G  + G+ I V  
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265

Query: 211 ATARV 215
           A  +V
Sbjct: 266 AQKKV 270



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query: 133 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 192
           KS    + + N+     +  L   F  FG IL  +++ +E GSKG+ FV FE    AD+A
Sbjct: 95  KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154

Query: 193 REKLHGTVVEGRKIEVNNATAR 214
            EK++G ++  RK+ V    +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 132 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 191
           ++ Q   L++ N+     D  LR+ F  FG I   +++  +  SKGFGFV F +  +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348

Query: 192 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 225
           A  +++G +V  + + V  A  +        N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382



 Score = 37.0 bits (84), Expect = 0.033
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 196
           L+V ++     +  L + F   G +L + +  +   R S G+ +V F+  ADA+RA + +
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 197 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 253
           +  V++G+ I +  +       K  V N +      +    A+Y      G +L C+   
Sbjct: 73  NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132

Query: 254 NQEGSSMYS 262
           ++ GS  Y+
Sbjct: 133 DENGSKGYA 141


>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
          Length = 631

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 4/100 (4%)

Query: 120 GQPQTQPSENTENKSQPKR---LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-S 175
           GQ +++     E  ++ K    +++ N      D  L+ +FG+FG  L V+++ +E G S
Sbjct: 171 GQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 230

Query: 176 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 215
           KGFGFV+FE   DA +A ++++G  + G++I V  A  +V
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 29/82 (35%), Positives = 44/82 (53%)

Query: 133 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 192
           KS    + V N+     +  L      FG IL   ++ +E GSKG+GFV FE    A+RA
Sbjct: 95  KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERA 154

Query: 193 REKLHGTVVEGRKIEVNNATAR 214
            +K++G ++ GRK+ V    +R
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSR 176



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 12/193 (6%)

Query: 125 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 184
           Q  ++   + Q   L+V N+     D  LR+ F  FG I   +++     SKGFGFV F 
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341

Query: 185 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY 244
           +  +A +A  +++G +V  + + V  A  +        N Y         V    +P   
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP-- 399

Query: 245 AGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF------PYPAATAAAAYRGAHLRGRGRT 298
           +G  +      +  + Y  PS +      P +      P+P     +A R     G  R 
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIR----PGAPRV 455

Query: 299 VYNTFRAAAPPPP 311
            ++T R A+   P
Sbjct: 456 PFSTMRPASSQVP 468


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 5/93 (5%)

Query: 122 PQTQPSENTENKSQPKR---LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSK 176
           P +    +  N++ P     L V  +     + DLR++F ++G I DV I++++  R S+
Sbjct: 100 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159

Query: 177 GFGFVTFENSADADRAREKLHGTVVEGRKIEVN 209
           GF FV FEN  DA  A+E+ +G  ++GR+I V+
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 197
           +++ N      D  L+ +FG+FG  L V+++ +E G SKGFGFV+FE   DA +A ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 198 GTVVEGRKIEVNNATARV 215
           G  + G++I V  A  +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270



 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 29/82 (35%), Positives = 45/82 (54%)

Query: 133 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 192
           KS    + + N+     +  L   F  FG IL  +++ +E GSKG+GFV FE    A+RA
Sbjct: 95  KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154

Query: 193 REKLHGTVVEGRKIEVNNATAR 214
            EK++G ++  RK+ V    +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 57/233 (24%), Positives = 89/233 (38%), Gaps = 23/233 (9%)

Query: 125 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 184
           Q  ++   + Q   L+V N+     D  LR+ F  FG I   +++     SKGFGFV F 
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFS 341

Query: 185 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKL-----NPVVGAVY 239
           +  +A +A  +++G +V  + + V  A  +        N Y           NPV+   Y
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP-Y 400

Query: 240 SPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTV 299
            P   +G  +      +  + Y  PS +      P +    A  A  +   ++ G     
Sbjct: 401 QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRW---TAQGARPHPFQNMPG----- 452

Query: 300 YNTFRAAAPPPPIPAYGGVVYQEPVYGNKLLQGGYAAYRYAQ---PTPATAAA 349
               R AAP PP         Q P    +++     A    Q   P PA AAA
Sbjct: 453 --AIRPAAPRPPFSTMRPASSQVP----RVMSTQRVANTSTQTMGPRPAAAAA 499



 Score = 35.8 bits (81), Expect = 0.074
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 139 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 196
           L+V ++     +  L + F   G IL + +  +   R S G+ +V F+  ADA+RA + +
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 197 HGTVVEGRKIEV 208
           +  V++G+ + +
Sbjct: 73  NFDVIKGKPVRI 84


>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
          Length = 524

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 136 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 193
           P RL+V ++ F   +  LR +F  FG+I  ++++ + E G SKG+GF+TF +S  A +A 
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308

Query: 194 EKLHGTVVEGRKIEVNNATAR 214
           E+L+G  + GR ++V + T R
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329


>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
          Length = 530

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 136 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 193
           P RL+V ++ F   +  LR +F  FG+I  ++++ + E G SKG+GF+TF +S  A +A 
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308

Query: 194 EKLHGTVVEGRKIEVNNATAR 214
           E+L+G  + GR ++V + T R
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329


>gi|189181654 deleted in azoospermia [Homo sapiens]
          Length = 744

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 76/291 (26%), Positives = 114/291 (39%), Gaps = 52/291 (17%)

Query: 65  HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 117
           +P P P++      P     L P     P   H + +   +T   T+S  A TQ+  AA 
Sbjct: 297 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 356

Query: 118 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 176
           + G          E K  P  + V  I  R  + ++   FG++G + +V+II N  G SK
Sbjct: 357 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 410

Query: 177 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 224
           G+GFV+F N  D     +K+ G+ +   G+K+++  A  +       V      VNP   
Sbjct: 411 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 466

Query: 225 --YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS-------LVYT-SAMP 274
             + N W+ NP       P+     V   Q  Q  S+   +P         LVY     P
Sbjct: 467 PQFQNVWR-NPNTETYLQPQITPNPV--TQHVQAYSAYPHSPGQVITGCQLLVYNYQEYP 523

Query: 275 GFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVY 325
            +P  A      Y+          VYN ++     P  P      YQ PVY
Sbjct: 524 TYPDSAFQVTTGYQ--------LPVYN-YQPFPAYPRSPFQVTAGYQLPVY 565



 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 42/260 (16%)

Query: 65  HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 117
           +P P P++      P     L P     P   H + +   +T   T+S  A TQ+  AA 
Sbjct: 132 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 191

Query: 118 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 176
           + G          E K  P  + V  I  R  + ++   FG++G + +V+II N  G SK
Sbjct: 192 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 245

Query: 177 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 224
           G+GFV+F N  D     +K+ G+ +   G+K+++  A  +       V      VNP   
Sbjct: 246 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 301

Query: 225 --YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAAT 282
             + N W+ NP       P+     V     + + ++    P+S +   A        ++
Sbjct: 302 PQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPETPNSTISREAS-----TQSS 352

Query: 283 AAAAYRGAHLRGRGRTVYNT 302
           +AAA +G  L   G+ V NT
Sbjct: 353 SAAASQGWVL-PEGKIVPNT 371



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 36/220 (16%)

Query: 99  DTSAQTVSGTA-TQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 157
           +T   T+S  A TQ+  AA + G          E K  P  + V  I  R  + ++   F
Sbjct: 7   ETPNSTISREASTQSSSAAASQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCF 60

Query: 158 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 214
           G++G + +V+II N  G SKG+GFV+F N  D     +K+ G+ +   G+K+++  A  +
Sbjct: 61  GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116

Query: 215 -------VMTNKKTVNP-----YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYS 262
                  V      VNP     + N W+ NP       P+     V     + + ++   
Sbjct: 117 QKLCARHVQPRPLVVNPPPPPQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPE 172

Query: 263 APSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNT 302
            P+S +   A        +++AAA +G  L   G+ V NT
Sbjct: 173 TPNSTISREAS-----TQSSSAAASQGWVL-PEGKIVPNT 206


>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
          Length = 579

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 76/291 (26%), Positives = 114/291 (39%), Gaps = 52/291 (17%)

Query: 65  HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 117
           +P P P++      P     L P     P   H + +   +T   T+S  A TQ+  AA 
Sbjct: 132 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 191

Query: 118 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 176
           + G          E K  P  + V  I  R  + ++   FG++G + +V+II N  G SK
Sbjct: 192 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 245

Query: 177 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 224
           G+GFV+F N  D     +K+ G+ +   G+K+++  A  +       V      VNP   
Sbjct: 246 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 301

Query: 225 --YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS-------LVYT-SAMP 274
             + N W+ NP       P+     V   Q  Q  S+   +P         LVY     P
Sbjct: 302 PQFQNVWR-NPNTETYLQPQITPNPV--TQHVQAYSAYPHSPGQVITGCQLLVYNYQEYP 358

Query: 275 GFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVY 325
            +P  A      Y+          VYN ++     P  P      YQ PVY
Sbjct: 359 TYPDSAFQVTTGYQ--------LPVYN-YQPFPAYPRSPFQVTAGYQLPVY 400



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 36/220 (16%)

Query: 99  DTSAQTVSGTA-TQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 157
           +T   T+S  A TQ+  AA + G          E K  P  + V  I  R  + ++   F
Sbjct: 7   ETPNSTISREASTQSSSAAASQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCF 60

Query: 158 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 214
           G++G + +V+II N  G SKG+GFV+F N  D     +K+ G+ +   G+K+++  A  +
Sbjct: 61  GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116

Query: 215 -------VMTNKKTVNP-----YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYS 262
                  V      VNP     + N W+ NP       P+     V     + + ++   
Sbjct: 117 QKLCARHVQPRPLVVNPPPPPQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPE 172

Query: 263 APSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNT 302
            P+S +   A        +++AAA +G  L   G+ V NT
Sbjct: 173 TPNSTISREAS-----TQSSSAAASQGWVL-PEGKIVPNT 206


>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 485

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 63/224 (28%), Positives = 90/224 (40%), Gaps = 36/224 (16%)

Query: 4   SQGVLLHPYGVPMI-------VPAAPYLPGLIQGNQEAAAAPDTMAQPYASAQFAPPQNG 56
           S GV   P  +  I       +PA P  P           +P  +         AP  NG
Sbjct: 267 SPGVAFSPCHIQQIGAVSLNGLPATPIAPA------SGLHSPPLLGTTAVPGLVAPITNG 320

Query: 57  IPAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSP--ADTSAQTVSGTATQT-- 112
                  P  HPA E     TV  + L  YP       QSP  A+T     SG    T  
Sbjct: 321 FAGVVPFPGGHPALE-----TVYANGLVPYPA------QSPTVAETLHPAFSGVQQYTAM 369

Query: 113 -DDAAPTD---GQPQTQPSENTENKSQPK--RLHVSNIPFRFRDPDLRQMFGQFGKILDV 166
              AA T      PQ  P    + +  P+   L + ++P  F D +L QMF  FG I+  
Sbjct: 370 YPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISS 429

Query: 167 EIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 208
           ++  +     SK FGFV+F+N A A  A + ++G  +  ++++V
Sbjct: 430 KVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 473



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 108 TATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV 166
           TA       P   +P Q +P+++     + ++L V  +  +  + D+ ++F  FG I + 
Sbjct: 104 TALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDEC 163

Query: 167 EIIFNERGS-KGFGFVTFENSADADRAREKLHGT 199
            ++    GS KG  FV F +  +A  A   LHG+
Sbjct: 164 TVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS 197



 Score = 33.5 bits (75), Expect = 0.37
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 138 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS--KGFGFVTFENSADADRAREK 195
           +L V  IP    + DL+ +F QFG+I ++ ++ +      KG  F+T+     A +A+  
Sbjct: 46  KLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTA 105

Query: 196 LH 197
           LH
Sbjct: 106 LH 107


>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 65/271 (23%), Positives = 99/271 (36%), Gaps = 28/271 (10%)

Query: 124 TQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFV 181
           T PS   ++ S    + V ++       D++  F  FG+I D  ++ +     SKG+GFV
Sbjct: 82  TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 141

Query: 182 TFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSP 241
           +F N  DA+ A +++ G  + GR+I  N AT +    K T    T     + VV    SP
Sbjct: 142 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQ-SSP 200

Query: 242 E---FYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPY---------PAATAAAAYRG 289
                Y G V      Q     +S    ++     P   Y          AA A  +  G
Sbjct: 201 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 260

Query: 290 AHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPV------YGNKLLQGGYAAYRYAQPT 343
             + G     Y          P+     + Y +P       YGN    G Y       P 
Sbjct: 261 TTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQY------MPN 314

Query: 344 PATAAAYSDSYGRVYAADPYHHALAPAPTYG 374
                AY   YG+ +    ++   + AP  G
Sbjct: 315 GWQVPAYG-MYGQAWNQQGFNQTQSSAPWMG 344



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 44/90 (48%)

Query: 136 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 195
           PK L+V N+     +  + Q+F Q G   + ++I +  G+  + FV F     A  A   
Sbjct: 6   PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAA 65

Query: 196 LHGTVVEGRKIEVNNATARVMTNKKTVNPY 225
           ++G  + G++++VN AT      K T N +
Sbjct: 66  MNGRKIMGKEVKVNWATTPSSQKKDTSNHF 95


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,657,853
Number of Sequences: 37866
Number of extensions: 1041612
Number of successful extensions: 5090
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 374
Number of HSP's that attempted gapping in prelim test: 4061
Number of HSP's gapped (non-prelim): 1096
length of query: 418
length of database: 18,247,518
effective HSP length: 105
effective length of query: 313
effective length of database: 14,271,588
effective search space: 4467007044
effective search space used: 4467007044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.