Guide to the Human Genome
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Search of human proteins with 22538403

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
         (397 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]      818   0.0  
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]       818   0.0  
gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]       780   0.0  
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]      750   0.0  
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]       716   0.0  
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]       646   0.0  
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]      475   e-134
gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]     468   e-132
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]     461   e-130
gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]      461   e-130
gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]     459   e-129
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]       358   5e-99
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]     353   1e-97
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]          63   4e-10
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]          63   4e-10
gi|37574731 boule isoform 1 [Homo sapiens]                             62   9e-10
gi|14719414 boule isoform 2 [Homo sapiens]                             61   2e-09
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    59   6e-09
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    59   6e-09
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    59   6e-09
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]      59   8e-09
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     59   1e-08
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]      59   1e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    58   2e-08
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]       57   2e-08
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]      57   2e-08
gi|189181654 deleted in azoospermia [Homo sapiens]                     56   5e-08
gi|62244004 modulator of estrogen induced transcription isoform ...    56   5e-08
gi|63176611 modulator of estrogen induced transcription isoform ...    56   5e-08
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]          56   7e-08

>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
          Length = 397

 Score =  818 bits (2113), Expect = 0.0
 Identities = 397/397 (100%), Positives = 397/397 (100%)

Query: 1   MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
           MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE
Sbjct: 1   MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60

Query: 61  HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
           HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH
Sbjct: 61  HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120

Query: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
           VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV
Sbjct: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180

Query: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240
           VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM
Sbjct: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240

Query: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300
           YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY
Sbjct: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300

Query: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360
           QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF
Sbjct: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360

Query: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
           APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397


>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
          Length = 397

 Score =  818 bits (2113), Expect = 0.0
 Identities = 397/397 (100%), Positives = 397/397 (100%)

Query: 1   MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
           MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE
Sbjct: 1   MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60

Query: 61  HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
           HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH
Sbjct: 61  HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120

Query: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
           VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV
Sbjct: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180

Query: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240
           VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM
Sbjct: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240

Query: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300
           YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY
Sbjct: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300

Query: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360
           QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF
Sbjct: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360

Query: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
           APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397


>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
          Length = 418

 Score =  780 bits (2013), Expect = 0.0
 Identities = 381/391 (97%), Positives = 385/391 (98%), Gaps = 1/391 (0%)

Query: 8   LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
           ++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 28  IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87

Query: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
           PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147

Query: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
           FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207

Query: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 247
           VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267

Query: 248 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 307
           VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+  YG 
Sbjct: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327

Query: 308 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 366
             + GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA
Sbjct: 328 KLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 387

Query: 367 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
           KTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 388 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418


>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
          Length = 370

 Score =  750 bits (1937), Expect = 0.0
 Identities = 369/397 (92%), Positives = 370/397 (93%), Gaps = 27/397 (6%)

Query: 1   MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
           MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE
Sbjct: 1   MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60

Query: 61  HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
           HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH
Sbjct: 61  HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120

Query: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
           VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV
Sbjct: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180

Query: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240
           VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY                
Sbjct: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY---------------- 224

Query: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300
                      A+PGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY
Sbjct: 225 -----------AVPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 273

Query: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360
           QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF
Sbjct: 274 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 333

Query: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
           APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 334 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370


>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
          Length = 392

 Score =  716 bits (1848), Expect = 0.0
 Identities = 355/391 (90%), Positives = 359/391 (91%), Gaps = 27/391 (6%)

Query: 8   LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
           ++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 28  IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87

Query: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
           PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147

Query: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
           FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207

Query: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 247
           VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267

Query: 248 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 307
           VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+  YG 
Sbjct: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327

Query: 308 DIY-GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 366
            +  GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAM         
Sbjct: 328 KLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAM--------- 378

Query: 367 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
                            ASIYRGGYNRFAPY
Sbjct: 379 -----------------ASIYRGGYNRFAPY 392


>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
          Length = 395

 Score =  646 bits (1666), Expect = 0.0
 Identities = 317/333 (95%), Positives = 322/333 (96%), Gaps = 1/333 (0%)

Query: 8   LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
           ++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 28  IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87

Query: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
           PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 88  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147

Query: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
           FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207

Query: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 247
           VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267

Query: 248 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 307
           VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+  YG 
Sbjct: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327

Query: 308 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAA 339
             + GGYAAYRYAQPTPATAAAYSD    V+ A
Sbjct: 328 KLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360


>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
          Length = 312

 Score =  475 bits (1223), Expect = e-134
 Identities = 246/342 (71%), Positives = 262/342 (76%), Gaps = 35/342 (10%)

Query: 21  MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 78
           MAQPY  AQ+ PP QNGIPAEY  P PHP  +Y+GQT VP EH + LY PAQTH EQ  +
Sbjct: 1   MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60

Query: 79  DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 136
           + S Q ++GT T  QTD+AA TD QP   PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 61  EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118

Query: 137 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 196
           FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178

Query: 197 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF 256
           TNKKT NPYTNGWKLNPVVGAVY PEFYA T                           GF
Sbjct: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------------------------GF 211

Query: 257 PYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAY 316
           PYP    A AYRGAHLRGRGR VYNTFRAA PPPPIP YG VVYQDGFYGA+IYGGYAAY
Sbjct: 212 PYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAY 271

Query: 317 RYAQPTPATAAAYSDSYGRVY-AADPYHHALAPAPTYGVGAM 357
           RYAQP  A AAAYSDSYGRVY AADPYHH + PA TY +G M
Sbjct: 272 RYAQPA-AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312


>gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]
          Length = 451

 Score =  468 bits (1203), Expect = e-132
 Identities = 261/410 (63%), Positives = 283/410 (69%), Gaps = 58/410 (14%)

Query: 9   RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
           +GNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 79  QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133

Query: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
             Q H EQS    S  T +G+ TQT+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 134 STQAHGEQS--SNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 191

Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 192 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 251

Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 252 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 309

Query: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
                     L+    +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY
Sbjct: 310 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 368

Query: 296 GGVVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALA 347
            GVVYQDGFYGAD+YGGYAAYRYAQP  AT        AAAYSD YGRVY ADPY HALA
Sbjct: 369 PGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALA 427

Query: 348 PAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
           PA +YGVGA+                          AS+YRGGY+RFAPY
Sbjct: 428 PAASYGVGAV--------------------------ASLYRGGYSRFAPY 451


>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
          Length = 450

 Score =  461 bits (1186), Expect = e-130
 Identities = 260/410 (63%), Positives = 280/410 (68%), Gaps = 59/410 (14%)

Query: 9   RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
           +GNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 79  QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133

Query: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
             Q H EQS    S Q  S T   T+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190

Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250

Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 308

Query: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
                     L+    +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY
Sbjct: 309 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 367

Query: 296 GGVVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALA 347
            GVVYQDGFYGAD+YGGYAAYRYAQP  AT        AAAYSD YGRVY ADPY HALA
Sbjct: 368 PGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALA 426

Query: 348 PAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
           PA +YGVGA+                          AS+YRGGY+RFAPY
Sbjct: 427 PAASYGVGAV--------------------------ASLYRGGYSRFAPY 450


>gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]
          Length = 380

 Score =  461 bits (1186), Expect = e-130
 Identities = 260/410 (63%), Positives = 280/410 (68%), Gaps = 59/410 (14%)

Query: 9   RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
           +GNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 9   QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63

Query: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
             Q H EQS    S Q  S T   T+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64  STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120

Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180

Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238

Query: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
                     L+    +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY
Sbjct: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297

Query: 296 GGVVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALA 347
            GVVYQDGFYGAD+YGGYAAYRYAQP  AT        AAAYSD YGRVY ADPY HALA
Sbjct: 298 PGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALA 356

Query: 348 PAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
           PA +YGVGA+                          AS+YRGGY+RFAPY
Sbjct: 357 PAASYGVGAV--------------------------ASLYRGGYSRFAPY 380


>gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]
          Length = 376

 Score =  459 bits (1181), Expect = e-129
 Identities = 259/406 (63%), Positives = 278/406 (68%), Gaps = 55/406 (13%)

Query: 9   RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
           +GNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 9   QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63

Query: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
             Q H EQS    S Q  S T   T+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64  STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120

Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180

Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238

Query: 247 ------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVV 299
                       +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY GVV
Sbjct: 239 GRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPGVV 297

Query: 300 YQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALAPAPT 351
           YQDGFYGAD+YGGYAAYRYAQP  AT        AAAYSD YGRVY ADPY HALAPA +
Sbjct: 298 YQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALAPAAS 356

Query: 352 YGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
           YGVGA+                          AS+YRGGY+RFAPY
Sbjct: 357 YGVGAV--------------------------ASLYRGGYSRFAPY 376


>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
          Length = 367

 Score =  358 bits (919), Expect = 5e-99
 Identities = 199/302 (65%), Positives = 215/302 (71%), Gaps = 19/302 (6%)

Query: 9   RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
           +GNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 9   QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63

Query: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
             Q H EQS    S  T +G+ TQT+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64  STQAHGEQS--SNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 121

Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 122 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 181

Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 182 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 239

Query: 247 ------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVV 299
                       +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY GV 
Sbjct: 240 GRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPGVD 298

Query: 300 YQ 301
            Q
Sbjct: 299 MQ 300


>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
          Length = 370

 Score =  353 bits (907), Expect = 1e-97
 Identities = 199/306 (65%), Positives = 214/306 (69%), Gaps = 24/306 (7%)

Query: 9   RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
           +GNQE    PD M QP+ +  F PP QNGIP EY  PH     +Y GQT   EH L LY 
Sbjct: 9   QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63

Query: 68  PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
             Q H EQS    S Q  S T   T+  A TDGQ  QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64  STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120

Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
           RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180

Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
           EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA +    QA+    +  + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238

Query: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
                     L+    +PGFPYP AAT AAA+RGAHLRGRGRTVY   R A PP  IPAY
Sbjct: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297

Query: 296 GGVVYQ 301
            GV  Q
Sbjct: 298 PGVDMQ 303


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 48/257 (18%)

Query: 84  TVSGTATQTDDAAPTDGQPQ-TQPSENTE-----NKSQPKRLHVSNIPFRFRDPDLRQMF 137
           T+ G         P   QP+ T+P E  +     + S+  ++ V  IP    + +LR+ F
Sbjct: 74  TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133

Query: 138 GQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195
            +FG + +V +I++  ++  +GFGF+TFE+    D+A   +H   + G+K+EV  A  R 
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAEPRD 192

Query: 196 MTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPG 255
             ++    P  + W    V  A      +AG                 P +        G
Sbjct: 193 SKSQAPGQPGASQWGSRVVPNAANG---WAG---------------QPPPTWQQGYGPQG 234

Query: 256 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY------GGVVYQDGF---YG 306
              PA  A   Y G    GRG        A  PPPP  +Y      GG     GF   YG
Sbjct: 235 MWVPAGQAIGGY-GPPPAGRG--------APPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285

Query: 307 ADIYGGYAAYRYAQPTP 323
           A       ++ Y  P P
Sbjct: 286 AP---PQFSFGYGPPPP 299


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 48/257 (18%)

Query: 84  TVSGTATQTDDAAPTDGQPQ-TQPSENTE-----NKSQPKRLHVSNIPFRFRDPDLRQMF 137
           T+ G         P   QP+ T+P E  +     + S+  ++ V  IP    + +LR+ F
Sbjct: 74  TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133

Query: 138 GQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195
            +FG + +V +I++  ++  +GFGF+TFE+    D+A   +H   + G+K+EV  A  R 
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAEPRD 192

Query: 196 MTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPG 255
             ++    P  + W    V  A      +AG                 P +        G
Sbjct: 193 SKSQAPGQPGASQWGSRVVPNAANG---WAG---------------QPPPTWQQGYGPQG 234

Query: 256 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY------GGVVYQDGF---YG 306
              PA  A   Y G    GRG        A  PPPP  +Y      GG     GF   YG
Sbjct: 235 MWVPAGQAIGGY-GPPPAGRG--------APPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285

Query: 307 ADIYGGYAAYRYAQPTP 323
           A       ++ Y  P P
Sbjct: 286 AP---PQFSFGYGPPPP 299


>gi|37574731 boule isoform 1 [Homo sapiens]
          Length = 295

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 83  QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 133
           +T SG  T    QTD  +P+       P  N  +  +     P R+ V  I F+  + DL
Sbjct: 2   ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61

Query: 134 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191
           R+ F Q+G + +V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 62  RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120


>gi|14719414 boule isoform 2 [Homo sapiens]
          Length = 283

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 91  QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDLRQMFGQFGKILD 145
           QTD  +P+       P  N  +  +     P R+ V  I F+  + DLR+ F Q+G + +
Sbjct: 2   QTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKE 61

Query: 146 VEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191
           V+I+ +  G SKG+GFVTFE   DA +  ++      + +K+ +  A
Sbjct: 62  VKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 108


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)

Query: 75  QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 131
           Q  AD + + ++G     +D     G+ +++     E  ++ K    +++ N      D 
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205

Query: 132 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
            L+++F QFGK L V+++ +  G SKGFGFV++E   DA++A E+++G  + G+ I V  
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265

Query: 191 ATARV 195
           A  +V
Sbjct: 266 AQKKV 270



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
           KS    + + N+     +  L   F  FG IL  +++ +E GSKG+ FV FE    AD+A
Sbjct: 95  KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154

Query: 173 REKLHGTVVEGRKIEVNNATAR 194
            EK++G ++  RK+ V    +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 112 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 171
           ++ Q   L++ N+     D  LR+ F  FG I   +++  +  SKGFGFV F +  +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348

Query: 172 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 205
           A  +++G +V  + + V  A  +        N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382



 Score = 37.0 bits (84), Expect = 0.031
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
           L+V ++     +  L + F   G +L + +  +   R S G+ +V F+  ADA+RA + +
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 177 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 233
           +  V++G+ I +  +       K  V N +      +    A+Y      G +L C+   
Sbjct: 73  NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132

Query: 234 NQEGSSMYS 242
           ++ GS  Y+
Sbjct: 133 DENGSKGYA 141


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)

Query: 75  QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 131
           Q  AD + + ++G     +D     G+ +++     E  ++ K    +++ N      D 
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205

Query: 132 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
            L+++F QFGK L V+++ +  G SKGFGFV++E   DA++A E+++G  + G+ I V  
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265

Query: 191 ATARV 195
           A  +V
Sbjct: 266 AQKKV 270



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
           KS    + + N+     +  L   F  FG IL  +++ +E GSKG+ FV FE    AD+A
Sbjct: 95  KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154

Query: 173 REKLHGTVVEGRKIEVNNATAR 194
            EK++G ++  RK+ V    +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 112 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 171
           ++ Q   L++ N+     D  LR+ F  FG I   +++  +  SKGFGFV F +  +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348

Query: 172 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 205
           A  +++G +V  + + V  A  +        N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382



 Score = 37.0 bits (84), Expect = 0.031
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
           L+V ++     +  L + F   G +L + +  +   R S G+ +V F+  ADA+RA + +
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 177 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 233
           +  V++G+ I +  +       K  V N +      +    A+Y      G +L C+   
Sbjct: 73  NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132

Query: 234 NQEGSSMYS 242
           ++ GS  Y+
Sbjct: 133 DENGSKGYA 141


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)

Query: 75  QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 131
           Q  AD + + ++G     +D     G+ +++     E  ++ K    +++ N      D 
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205

Query: 132 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
            L+++F QFGK L V+++ +  G SKGFGFV++E   DA++A E+++G  + G+ I V  
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265

Query: 191 ATARV 195
           A  +V
Sbjct: 266 AQKKV 270



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
           KS    + + N+     +  L   F  FG IL  +++ +E GSKG+ FV FE    AD+A
Sbjct: 95  KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154

Query: 173 REKLHGTVVEGRKIEVNNATAR 194
            EK++G ++  RK+ V    +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176



 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 26/94 (27%), Positives = 46/94 (48%)

Query: 112 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 171
           ++ Q   L++ N+     D  LR+ F  FG I   +++  +  SKGFGFV F +  +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348

Query: 172 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 205
           A  +++G +V  + + V  A  +        N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382



 Score = 37.0 bits (84), Expect = 0.031
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)

Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
           L+V ++     +  L + F   G +L + +  +   R S G+ +V F+  ADA+RA + +
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 177 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 233
           +  V++G+ I +  +       K  V N +      +    A+Y      G +L C+   
Sbjct: 73  NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132

Query: 234 NQEGSSMYS 242
           ++ GS  Y+
Sbjct: 133 DENGSKGYA 141


>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
          Length = 631

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 4/100 (4%)

Query: 100 GQPQTQPSENTENKSQPKR---LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-S 155
           GQ +++     E  ++ K    +++ N      D  L+ +FG+FG  L V+++ +E G S
Sbjct: 171 GQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 230

Query: 156 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195
           KGFGFV+FE   DA +A ++++G  + G++I V  A  +V
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 29/82 (35%), Positives = 44/82 (53%)

Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
           KS    + V N+     +  L      FG IL   ++ +E GSKG+GFV FE    A+RA
Sbjct: 95  KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERA 154

Query: 173 REKLHGTVVEGRKIEVNNATAR 194
            +K++G ++ GRK+ V    +R
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSR 176



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 12/193 (6%)

Query: 105 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 164
           Q  ++   + Q   L+V N+     D  LR+ F  FG I   +++     SKGFGFV F 
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341

Query: 165 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY 224
           +  +A +A  +++G +V  + + V  A  +        N Y         V    +P   
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP-- 399

Query: 225 AGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF------PYPAATAAAAYRGAHLRGRGRT 278
           +G  +      +  + Y  PS +      P +      P+P     +A R     G  R 
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIR----PGAPRV 455

Query: 279 VYNTFRAAAPPPP 291
            ++T R A+   P
Sbjct: 456 PFSTMRPASSQVP 468


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 5/93 (5%)

Query: 102 PQTQPSENTENKSQPKR---LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSK 156
           P +    +  N++ P     L V  +     + DLR++F ++G I DV I++++  R S+
Sbjct: 100 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159

Query: 157 GFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189
           GF FV FEN  DA  A+E+ +G  ++GR+I V+
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 177
           +++ N      D  L+ +FG+FG  L V+++ +E G SKGFGFV+FE   DA +A ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 178 GTVVEGRKIEVNNATARV 195
           G  + G++I V  A  +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270



 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 29/82 (35%), Positives = 45/82 (54%)

Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
           KS    + + N+     +  L   F  FG IL  +++ +E GSKG+GFV FE    A+RA
Sbjct: 95  KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154

Query: 173 REKLHGTVVEGRKIEVNNATAR 194
            EK++G ++  RK+ V    +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 16/198 (8%)

Query: 105 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 164
           Q  ++   + Q   L+V N+     D  LR+ F  FG I   +++     SKGFGFV F 
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFS 341

Query: 165 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKL-----NPVVGAVY 219
           +  +A +A  +++G +V  + + V  A  +        N Y           NPV+   Y
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP-Y 400

Query: 220 SPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF------PYPAATAAAAYRGAHLR 273
            P   +G  +      +  + Y  PS +      P +      P+P      A R A   
Sbjct: 401 QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA--- 457

Query: 274 GRGRTVYNTFRAAAPPPP 291
              R  ++T R A+   P
Sbjct: 458 -APRPPFSTMRPASSQVP 474



 Score = 35.8 bits (81), Expect = 0.070
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
           L+V ++     +  L + F   G IL + +  +   R S G+ +V F+  ADA+RA + +
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 177 HGTVVEGRKIEV 188
           +  V++G+ + +
Sbjct: 73  NFDVIKGKPVRI 84


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 7/175 (4%)

Query: 33  PQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQT 92
           P+ G     + P  HP P + G    P      +PP      Q P        S      
Sbjct: 216 PKPGGGPGLSTPGGHPKPPHRGGGE-PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISD 274

Query: 93  DDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 152
            +    +     +P E T   +Q  RL V N+P    + + +++F ++G+    E+  N+
Sbjct: 275 SEGFKANLSLLRRPGEKTY--TQRCRLFVGNLPADITEDEFKRLFAKYGE--PGEVFINK 330

Query: 153 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 207
              KGFGF+  E+ A A+ A+ +L  T + GR++ V  AT     + + ++PY +
Sbjct: 331 --GKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVS 383



 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREK 175
           L V N+     +  L + F QFG I    +I ++RG S G G V F +   A +A E+
Sbjct: 373 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 430


>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
          Length = 524

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 116 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 173
           P RL+V ++ F   +  LR +F  FG+I  ++++ + E G SKG+GF+TF +S  A +A 
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308

Query: 174 EKLHGTVVEGRKIEVNNATAR 194
           E+L+G  + GR ++V + T R
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329


>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
          Length = 530

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)

Query: 116 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 173
           P RL+V ++ F   +  LR +F  FG+I  ++++ + E G SKG+GF+TF +S  A +A 
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308

Query: 174 EKLHGTVVEGRKIEVNNATAR 194
           E+L+G  + GR ++V + T R
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329


>gi|189181654 deleted in azoospermia [Homo sapiens]
          Length = 744

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 42/260 (16%)

Query: 45  HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 97
           +P P P++      P     L P     P   H + +   +T   T+S  A TQ+  AA 
Sbjct: 132 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 191

Query: 98  TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 156
           + G          E K  P  + V  I  R  + ++   FG++G + +V+II N  G SK
Sbjct: 192 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 245

Query: 157 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 204
           G+GFV+F N  D     +K+ G+ +   G+K+++  A  +       V      VNP   
Sbjct: 246 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 301

Query: 205 --YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAAT 262
             + N W+ NP       P+     V     + + ++    P+S +   A        ++
Sbjct: 302 PQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPETPNSTISREAS-----TQSS 352

Query: 263 AAAAYRGAHLRGRGRTVYNT 282
           +AAA +G  L   G+ V NT
Sbjct: 353 SAAASQGWVL-PEGKIVPNT 371



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 33/200 (16%)

Query: 45  HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 97
           +P P P++      P     L P     P   H + +   +T   T+S  A TQ+  AA 
Sbjct: 297 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 356

Query: 98  TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 156
           + G          E K  P  + V  I  R  + ++   FG++G + +V+II N  G SK
Sbjct: 357 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 410

Query: 157 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 204
           G+GFV+F N  D     +K+ G+ +   G+K+++  A  +       V      VNP   
Sbjct: 411 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 466

Query: 205 --YTNGWKLNPVVGAVYSPE 222
             + N W+ NP       P+
Sbjct: 467 PQFQNVWR-NPNTETYLQPQ 485



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 36/220 (16%)

Query: 79  DTSAQTVSGTA-TQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 137
           +T   T+S  A TQ+  AA + G          E K  P  + V  I  R  + ++   F
Sbjct: 7   ETPNSTISREASTQSSSAAASQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCF 60

Query: 138 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 194
           G++G + +V+II N  G SKG+GFV+F N  D     +K+ G+ +   G+K+++  A  +
Sbjct: 61  GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116

Query: 195 -------VMTNKKTVNP-----YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYS 242
                  V      VNP     + N W+ NP       P+     V     + + ++   
Sbjct: 117 QKLCARHVQPRPLVVNPPPPPQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPE 172

Query: 243 APSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNT 282
            P+S +   A        +++AAA +G  L   G+ V NT
Sbjct: 173 TPNSTISREAS-----TQSSSAAASQGWVL-PEGKIVPNT 206


>gi|62244004 modulator of estrogen induced transcription isoform b
           [Homo sapiens]
          Length = 1016

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 76  SPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQ 135
           S    S Q  S +    D    +     +  S +  + S  K + VS +    +  DL+ 
Sbjct: 325 SSTGASGQAKSSSKESKDSKTSSKDDKGSTSSTSGSSGSSTKNIWVSGLSSNTKAADLKN 384

Query: 136 MFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
           +FG++GK+L  +++ N R  G+K +G VT  +S +  R    LH T + G+ I V
Sbjct: 385 LFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLISV 439


>gi|63176611 modulator of estrogen induced transcription isoform a
           [Homo sapiens]
          Length = 1034

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 76  SPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQ 135
           S    S Q  S +    D    +     +  S +  + S  K + VS +    +  DL+ 
Sbjct: 343 SSTGASGQAKSSSKESKDSKTSSKDDKGSTSSTSGSSGSSTKNIWVSGLSSNTKAADLKN 402

Query: 136 MFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
           +FG++GK+L  +++ N R  G+K +G VT  +S +  R    LH T + G+ I V
Sbjct: 403 LFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLISV 457


>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
          Length = 579

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 33/200 (16%)

Query: 45  HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 97
           +P P P++      P     L P     P   H + +   +T   T+S  A TQ+  AA 
Sbjct: 132 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 191

Query: 98  TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 156
           + G          E K  P  + V  I  R  + ++   FG++G + +V+II N  G SK
Sbjct: 192 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 245

Query: 157 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 204
           G+GFV+F N  D     +K+ G+ +   G+K+++  A  +       V      VNP   
Sbjct: 246 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 301

Query: 205 --YTNGWKLNPVVGAVYSPE 222
             + N W+ NP       P+
Sbjct: 302 PQFQNVWR-NPNTETYLQPQ 320



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 36/220 (16%)

Query: 79  DTSAQTVSGTA-TQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 137
           +T   T+S  A TQ+  AA + G          E K  P  + V  I  R  + ++   F
Sbjct: 7   ETPNSTISREASTQSSSAAASQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCF 60

Query: 138 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 194
           G++G + +V+II N  G SKG+GFV+F N  D     +K+ G+ +   G+K+++  A  +
Sbjct: 61  GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116

Query: 195 -------VMTNKKTVNP-----YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYS 242
                  V      VNP     + N W+ NP       P+     V     + + ++   
Sbjct: 117 QKLCARHVQPRPLVVNPPPPPQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPE 172

Query: 243 APSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNT 282
            P+S +   A        +++AAA +G  L   G+ V NT
Sbjct: 173 TPNSTISREAS-----TQSSSAAASQGWVL-PEGKIVPNT 206


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,653,258
Number of Sequences: 37866
Number of extensions: 974664
Number of successful extensions: 4715
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 312
Number of HSP's that attempted gapping in prelim test: 3758
Number of HSP's gapped (non-prelim): 1014
length of query: 397
length of database: 18,247,518
effective HSP length: 104
effective length of query: 293
effective length of database: 14,309,454
effective search space: 4192670022
effective search space used: 4192670022
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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