Guide to the Human Genome
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Name: DPF2 Sequence: fasta or formatted (391aa) NCBI GI: 5454004
Description:

D4, zinc and double PHD fingers family 2

Referenced in:

Neurons
PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         21           2
 C cysteine            5.1         20           2
 D aspartate           9.0         35           3
 E glutamate           7.4         29           3
 F phenylalanine       1.8          7           1
 G glycine             6.6         26           1
 H histidine           2.3          9           1
 I isoleucine          2.6         10           1
 K lysine              7.9         31           2
 L leucine             8.7         34           2
 M methionine          1.8          7           2
 N asparagine          3.3         13           2
 P proline             6.9         27           2
 Q glutamine           4.1         16           1
 R arginine            6.9         27           2
 S serine              8.7         34           2
 T threonine           3.1         12           1
 V valine              3.3         13           2
 W tryptophan          1.0          4           1
 Y tyrosine            4.1         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   D4, zinc and double PHD fingers family 2 
DPF1                  0.561   D4, zinc and double PHD fingers family 1 isoform a ...
DPF1                  0.475   D4, zinc and double PHD fingers family 1 isoform b ...
DPF1                  0.461   D4, zinc and double PHD fingers family 1 isoform c ...
DPF3                  0.439   D4, zinc and double PHD fingers, family 3 
MYST3                 0.138   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.138   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.138   MYST histone acetyltransferase (monocytic leukemia)...
MYST4                 0.137   MYST histone acetyltransferase (monocytic leukemia)...
PHF10                 0.131   PHD finger protein 10 isoform b 
PHF10                 0.131   PHD finger protein 10 isoform a 
MLL2                  0.082   myeloid/lymphoid or mixed-lineage leukemia 2 
MLL3                  0.078   myeloid/lymphoid or mixed-lineage leukemia 3 
KDM5D                 0.050   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.050   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.050   jumonji, AT rich interactive domain 1D isoform 1 [H...
KDM5C                 0.049   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.049   jumonji, AT rich interactive domain 1C isoform 1 [H...
BAZ2A                 0.047   bromodomain adjacent to zinc finger domain, 2A [Homo...
PHRF1                 0.046   PHD and ring finger domains 1 
KDM5B                 0.046   jumonji, AT rich interactive domain 1B 
LOC100133760          0.046   PREDICTED: similar to Jumonji, AT rich interactive ...
KDM5A                 0.045   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.045   retinoblastoma binding protein 2 isoform 2 
BAZ1B                 0.044   bromodomain adjacent to zinc finger domain, 1B [Homo...
CHD5                  0.042   chromodomain helicase DNA binding protein 5 
CHD4                  0.041   chromodomain helicase DNA binding protein 4 
BAZ2B                 0.040   bromodomain adjacent to zinc finger domain, 2B [Homo...
BAZ1A                 0.039   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.039   bromodomain adjacent to zinc finger domain, 1A isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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