Guide to the Human Genome
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Name: FAM71E1 Sequence: fasta or formatted (231aa) NCBI GI: 76253859
Description:

hypothetical protein LOC112703

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         15           2
 C cysteine            0.9          2           1
 D aspartate           4.8         11           1
 E glutamate           5.2         12           1
 F phenylalanine       6.1         14           1
 G glycine             7.4         17           2
 H histidine           1.7          4           2
 I isoleucine          1.7          4           1
 K lysine              3.0          7           1
 L leucine            14.3         33           4
 M methionine          1.7          4           1
 N asparagine          1.7          4           1
 P proline            12.1         28           4
 Q glutamine           5.2         12           1
 R arginine            9.1         21           2
 S serine              5.6         13           2
 T threonine           3.9          9           1
 V valine              6.9         16           2
 W tryptophan          0.9          2           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC112703 
FAM71A                0.181   hypothetical protein LOC149647 
FAM71B                0.163   family with sequence similarity 71, member B 
FAM71C                0.163   hypothetical protein LOC196472 
FAM71E2               0.150   hypothetical protein LOC284418 
FAM71D                0.128   hypothetical protein LOC161142 
FAM71F2               0.094   hypothetical protein LOC346653 isoform b 
FAM71F1               0.089   testes development-related NYD-SP18 
FAM71F2               0.076   hypothetical protein LOC346653 isoform a 
LOC100291479          0.029   PREDICTED: hypothetical protein XP_002348186 
LOC100288699          0.022   PREDICTED: hypothetical protein XP_002343846 
ABI3                  0.022   NESH protein isoform 2 
ABI3                  0.022   NESH protein isoform 1 
MNT                   0.016   MAX binding protein 
PRB4                  0.016   proline-rich protein BstNI subfamily 4 precursor [Ho...
DIAPH1                0.016   diaphanous 1 isoform 2 
DIAPH1                0.016   diaphanous 1 isoform 1 
LCP2                  0.016   lymphocyte cytosolic protein 2 
KIAA1522              0.016   hypothetical protein LOC57648 
C6orf132              0.016   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC100291447          0.016   PREDICTED: hypothetical protein XP_002348185 
C6orf132              0.016   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC728597             0.016   PREDICTED: doublecortin domain-containing protein E...
C6orf132              0.016   PREDICTED: hypothetical protein LOC647024 
LOC728597             0.016   PREDICTED: doublecortin domain-containing protein E...
FAM110A               0.016   hypothetical protein LOC83541 
FAM110A               0.016   hypothetical protein LOC83541 
FAM110A               0.016   hypothetical protein LOC83541 
CDC42EP5              0.013   CDC42 effector protein 5 
PRR12                 0.013   proline rich 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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