Guide to the Human Genome
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Name: FAM71C Sequence: fasta or formatted (241aa) NCBI GI: 23503301
Description:

hypothetical protein LOC196472

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         17           2
 C cysteine            3.3          8           2
 D aspartate           4.1         10           1
 E glutamate           7.1         17           2
 F phenylalanine       4.1         10           1
 G glycine             4.1         10           1
 H histidine           2.1          5           1
 I isoleucine          5.4         13           1
 K lysine              4.1         10           2
 L leucine            10.0         24           2
 M methionine          5.4         13           1
 N asparagine          2.9          7           1
 P proline             6.2         15           2
 Q glutamine           3.7          9           1
 R arginine            6.6         16           1
 S serine              7.1         17           2
 T threonine           5.8         14           1
 V valine              5.8         14           1
 W tryptophan          0.4          1           1
 Y tyrosine            4.6         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC196472 
FAM71A                0.508   hypothetical protein LOC149647 
FAM71B                0.465   family with sequence similarity 71, member B 
FAM71D                0.189   hypothetical protein LOC161142 
FAM71E1               0.157   hypothetical protein LOC112703 
FAM71E2               0.155   hypothetical protein LOC284418 
FAM71F2               0.105   hypothetical protein LOC346653 isoform b 
FAM71F1               0.101   testes development-related NYD-SP18 
FAM71F2               0.090   hypothetical protein LOC346653 isoform a 
URB1                  0.011   nucleolar preribosomal-associated protein 1 
RICTOR                0.009   rapamycin-insensitive companion of mTOR 
PDCD7                 0.006   programmed cell death 7 
DHX9                  0.006   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
DNAH5                 0.006   dynein, axonemal, heavy chain 5 
NMBR                  0.006   neuromedin B receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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