Guide to the Human Genome
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Name: NFX1 Sequence: fasta or formatted (1024aa) NCBI GI: 22212925
Description:

nuclear transcription factor, X-box binding 1 isoform 2

Referenced in:

Ovary, Uterus and Placenta
Zinc Finger Proteins

Other entries for this name:
alt prot [1120aa] nuclear transcription factor, X-box binding 1 isoform 1
alt prot [833aa] nuclear transcription factor, X-box binding 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         46           2
 C cysteine            9.7         99           2
 D aspartate           3.9         40           2
 E glutamate           6.8         70           2
 F phenylalanine       2.2         23           1
 G glycine             6.3         65           2
 H histidine           4.5         46           2
 I isoleucine          2.7         28           2
 K lysine              7.4         76           2
 L leucine             5.6         57           2
 M methionine          1.3         13           1
 N asparagine          3.5         36           2
 P proline             7.9         81           3
 Q glutamine           5.0         51           2
 R arginine            6.3         65           2
 S serine              9.1         93           3
 T threonine           5.3         54           2
 V valine              5.6         57           2
 W tryptophan          1.0         10           1
 Y tyrosine            1.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear transcription factor, X-box binding 1 isofor... 
NFX1                  0.990   nuclear transcription factor, X-box binding 1 isofor...
NFX1                  0.797   nuclear transcription factor, X-box binding 1 isofor...
NFXL1                 0.157   nuclear transcription factor, X-box binding-like 1 [...
KRTAP10-6             0.032   keratin associated protein 10-6 
ZNFX1                 0.031   zinc finger, NFX1-type containing 1 
KRTAP10-4             0.028   keratin associated protein 10-4 
KRTAP10-7             0.027   keratin associated protein 10-7 
MEGF10                0.024   multiple EGF-like-domains 10 
SCARF1                0.022   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.022   scavenger receptor class F, member 1 isoform 1 precu...
SCARF2                0.020   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.020   scavenger receptor class F, member 2 isoform 2 [Homo...
NOTCH4                0.019   notch4 preproprotein 
KRTAP10-11            0.018   keratin associated protein 10-11 
LOC100131696          0.018   PREDICTED: keratin associated protein 
KRTAP10-5             0.018   keratin associated protein 10-5 
LOC100131696          0.017   PREDICTED: keratin associated protein 
LOC100288060          0.017   PREDICTED: hypothetical protein XP_002343557 
PEAR1                 0.017   platelet endothelial aggregation receptor 1 
KRTAP10-2             0.017   keratin associated protein 10-2 
KRTAP5-3              0.016   keratin associated protein 5-3 
KRTAP10-1             0.016   keratin associated protein 10-1 
KCP                   0.015   cysteine rich BMP regulator 2 isoform 2 
KRTAP10-12            0.015   keratin associated protein 10-12 
KRTAP10-10            0.015   keratin associated protein 10-10 
KRTAP4-9              0.014   PREDICTED: keratin associated protein 4-9 isoform 1...
MEGF6                 0.014   EGF-like-domain, multiple 3 
MEGF11                0.014   multiple EGF-like-domains 11 
LOC728318             0.014   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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