Guide to the Human Genome
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Name: ZNFX1 Sequence: fasta or formatted (1918aa) NCBI GI: 28626521
Description:

zinc finger, NFX1-type containing 1

Referenced in:

RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         91           2
 C cysteine            4.6         88           2
 D aspartate           3.8         73           2
 E glutamate           9.1        175           4
 F phenylalanine       3.1         59           2
 G glycine             5.3        101           2
 H histidine           3.5         68           1
 I isoleucine          5.0         96           2
 K lysine              6.0        115           3
 L leucine            10.2        195           2
 M methionine          2.3         45           2
 N asparagine          3.9         74           2
 P proline             5.0         95           2
 Q glutamine           6.7        129           2
 R arginine            6.7        129           2
 S serine              6.0        115           3
 T threonine           4.4         84           3
 V valine              6.0        115           2
 W tryptophan          1.1         21           1
 Y tyrosine            2.6         50           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, NFX1-type containing 1 
UPF1                  0.027   regulator of nonsense transcripts 1 
AQR                   0.024   aquarius 
NFXL1                 0.020   nuclear transcription factor, X-box binding-like 1 [...
NFX1                  0.017   nuclear transcription factor, X-box binding 1 isofor...
NFX1                  0.017   nuclear transcription factor, X-box binding 1 isofor...
DNA2                  0.017   DNA replication helicase 2 homolog 
SETX                  0.017   senataxin 
IGHMBP2               0.015   immunoglobulin mu binding protein 2 
PRIC285               0.014   PPAR-alpha interacting complex protein 285 isoform ...
PRIC285               0.014   PPAR-alpha interacting complex protein 285 isoform ...
NFX1                  0.014   nuclear transcription factor, X-box binding 1 isofor...
KRTAP10-6             0.012   keratin associated protein 10-6 
MOV10L1               0.011   MOV10-like 1 
KRTAP10-7             0.011   keratin associated protein 10-7 
KRTAP10-4             0.010   keratin associated protein 10-4 
MOV10                 0.010   Mov10, Moloney leukemia virus 10, homolog 
MOV10                 0.010   Mov10, Moloney leukemia virus 10, homolog 
KRTAP10-9             0.010   keratin associated protein 10-9 
LOC728318             0.009   PREDICTED: hypothetical protein 
LOC728318             0.009   PREDICTED: hypothetical protein 
LOC728318             0.009   PREDICTED: hypothetical protein 
SCARF1                0.009   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.009   scavenger receptor class F, member 1 isoform 1 precu...
HELZ                  0.009   helicase with zinc finger domain 
KRTAP10-1             0.009   keratin associated protein 10-1 
KRTAP9-8              0.009   keratin associated protein 9.8 
KRTAP4-8              0.009   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.009   PREDICTED: similar to keratin associated protein 4-...
MEGF11                0.009   multiple EGF-like-domains 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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