Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EFCAB2 Sequence: fasta or formatted (133aa) NCBI GI: 221316729
Description:

EF-hand calcium binding domain 2 isoform b

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [162aa] EF-hand calcium binding domain 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          6           1
 C cysteine            1.5          2           2
 D aspartate           6.8          9           1
 E glutamate          17.3         23           4
 F phenylalanine       5.3          7           1
 G glycine             5.3          7           1
 H histidine           2.3          3           1
 I isoleucine          8.3         11           2
 K lysine              6.8          9           2
 L leucine             9.0         12           2
 M methionine          2.3          3           1
 N asparagine          1.5          2           2
 P proline             4.5          6           1
 Q glutamine           0.0          0           0
 R arginine            7.5         10           2
 S serine              3.0          4           1
 T threonine           5.3          7           1
 V valine              6.8          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EF-hand calcium binding domain 2 isoform b 
EFCAB2                0.926   EF-hand calcium binding domain 2 isoform a 
CALM3                 0.198   calmodulin 3 
CALM2                 0.198   calmodulin 2 
CALM1                 0.198   calmodulin 1 
CALML3                0.186   calmodulin-like 3 
TNNC2                 0.174   fast skeletal muscle troponin C 
CETN2                 0.161   caltractin 
CETN1                 0.153   centrin 1 
CETN3                 0.124   centrin 3 
TNNC1                 0.103   troponin C, slow 
CABP5                 0.103   calcium binding protein 5 
CABP7                 0.103   calcium binding protein 7 
MYL1                  0.103   fast skeletal myosin alkali light chain 1 isoform 1f...
CALML5                0.099   calmodulin-like 5 
CABP1                 0.099   calcium binding protein 1 isoform 1 
MYL1                  0.099   fast skeletal myosin alkali light chain 1 isoform 3f...
MYL9                  0.095   myosin regulatory light chain 9 isoform a 
CALML6                0.095   calmodulin-like 6 
CABP2                 0.095   calcium binding protein 2 isoform 2 
CABP1                 0.095   calcium binding protein 1 isoform 3 
CABP1                 0.095   calcium binding protein 1 isoform 2 
CABP2                 0.091   calcium binding protein 2 isoform 1 
MYL6B                 0.091   smooth muscle and non-muscle myosin alkali light chai...
CABP4                 0.083   calcium binding protein 4 
CALN1                 0.079   calneuron 1 isoform 2 
CALN1                 0.079   calneuron 1 isoform 1 
MYL12B                0.079   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.079   myosin regulatory light chain MRCL2 isoform B [Homo...
MYL12B                0.079   myosin regulatory light chain MRCL2 isoform A [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press