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Search of human proteins with 221316627
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221316627 cysteine and glycine-rich protein 1 isoform 2
[Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221316627 cysteine and glycine-rich protein 1 isoform 2 [Homo... 305 8e-84
gi|4758086 cysteine and glycine-rich protein 1 isoform 1 [Homo s... 299 6e-82
gi|4503101 cysteine and glycine-rich protein 2 [Homo sapiens] 241 2e-64
gi|189083753 cysteine and glycine-rich protein 3 [Homo sapiens] 206 4e-54
gi|4502893 cysteine and glycine-rich protein 3 [Homo sapiens] 206 4e-54
gi|4503049 cysteine-rich protein 2 [Homo sapiens] 86 1e-17
gi|116517305 cysteine-rich protein 3 [Homo sapiens] 70 7e-13
gi|4503047 cysteine-rich protein 1 (intestinal) [Homo sapiens] 62 2e-10
gi|170172518 microtubule associated monoxygenase, calponin and L... 52 2e-07
gi|209862793 microtubule associated monoxygenase, calponin and L... 52 2e-07
gi|209862789 microtubule associated monoxygenase, calponin and L... 52 2e-07
gi|119372315 xin actin-binding repeat containing 2 isoform 2 [Ho... 51 4e-07
gi|14249622 ajuba isoform 1 [Homo sapiens] 50 5e-07
gi|13386490 LIM domain containing 2 [Homo sapiens] 50 5e-07
gi|165905591 LIM domain and actin binding 1 isoform c [Homo sapi... 50 8e-07
gi|165905589 LIM domain and actin binding 1 isoform a [Homo sapi... 50 8e-07
gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens] 50 8e-07
gi|7662284 microtubule associated monoxygenase, calponin and LIM... 49 2e-06
gi|47087157 nebulette non-muscle isoform [Homo sapiens] 47 5e-06
gi|5453710 LIM and SH3 protein 1 [Homo sapiens] 46 1e-05
gi|37675280 ajuba isoform 2 [Homo sapiens] 45 1e-05
gi|228480221 four and a half LIM domains 1 isoform 4 [Homo sapiens] 45 2e-05
gi|228480213 four and a half LIM domains 1 isoform 2 [Homo sapiens] 45 2e-05
gi|228480211 four and a half LIM domains 1 isoform 1 [Homo sapiens] 45 2e-05
gi|228480207 four and a half LIM domains 1 isoform 2 [Homo sapiens] 45 2e-05
gi|228480209 four and a half LIM domains 1 isoform 3 [Homo sapiens] 45 2e-05
gi|228480205 four and a half LIM domains 1 isoform 5 [Homo sapiens] 45 2e-05
gi|21361122 four and a half LIM domains 1 isoform 2 [Homo sapiens] 45 2e-05
gi|54112385 four and a half LIM domains 3 [Homo sapiens] 44 4e-05
gi|46049092 nebulin-related anchoring protein isoform C [Homo sa... 44 6e-05
>gi|221316627 cysteine and glycine-rich protein 1 isoform 2 [Homo
sapiens]
Length = 140
Score = 305 bits (781), Expect = 8e-84
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS
Sbjct: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 120
CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 120
Query: 121 RCSQAVYAAEKVIGAGKGLF 140
RCSQAVYAAEKVIGAGKGLF
Sbjct: 121 RCSQAVYAAEKVIGAGKGLF 140
>gi|4758086 cysteine and glycine-rich protein 1 isoform 1 [Homo
sapiens]
Length = 193
Score = 299 bits (765), Expect = 6e-82
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS
Sbjct: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
Query: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 120
CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 120
Query: 121 RCSQAVYAAEKVIGAGK 137
RCSQAVYAAEKVIGAGK
Sbjct: 121 RCSQAVYAAEKVIGAGK 137
Score = 97.1 bits (240), Expect = 4e-21
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGK 64
GG ++C C + VY AE+V G S+HK+CF C C K L+STT+A EIYCK CY K
Sbjct: 114 GGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYCKGCYAK 173
Query: 65 KYGPKGYGYGQGAGTL 80
+GPKG+G+GQGAG L
Sbjct: 174 NFGPKGFGFGQGAGAL 189
>gi|4503101 cysteine and glycine-rich protein 2 [Homo sapiens]
Length = 193
Score = 241 bits (614), Expect = 2e-64
Identities = 106/137 (77%), Positives = 117/137 (85%)
Query: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
MP WGGG KCG C +TVY AEEVQC+G SFH+ CFLCMVC+KNLDSTTVA+H EEIYCKS
Sbjct: 1 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKS 60
Query: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCP 120
CYGKKYGPKGYGYGQGAGTL+ D+GE LGIK E HRPTTNPN SKFAQK GG+E+C
Sbjct: 61 CYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGAEKCS 120
Query: 121 RCSQAVYAAEKVIGAGK 137
RC +VYAAEK+IGAGK
Sbjct: 121 RCGDSVYAAEKIIGAGK 137
Score = 96.7 bits (239), Expect = 6e-21
Identities = 41/77 (53%), Positives = 53/77 (68%)
Query: 4 WGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYG 63
+GG +KC C +VY AE++ G +HK+CF C C K+L+STT+ EIYCK CY
Sbjct: 113 YGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYA 172
Query: 64 KKYGPKGYGYGQGAGTL 80
K +GPKG+GYGQGAG L
Sbjct: 173 KNFGPKGFGYGQGAGAL 189
>gi|189083753 cysteine and glycine-rich protein 3 [Homo sapiens]
Length = 194
Score = 206 bits (525), Expect = 4e-54
Identities = 92/138 (66%), Positives = 107/138 (77%), Gaps = 1/138 (0%)
Query: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
MPNWGGG KCG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYCK
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAP-GHRPTTNPNASKFAQKIGGSERC 119
CYG++YGPKG GYGQGAG LSTD GE LG++ +++P R T N SKF K G SE+C
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC 120
Query: 120 PRCSQAVYAAEKVIGAGK 137
PRC ++VYAAEKV+G GK
Sbjct: 121 PRCGKSVYAAEKVMGGGK 138
Score = 80.5 bits (197), Expect = 4e-16
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 4 WGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYG 63
+G +KC C K+VY AE+V G +HK+CF C +C K+L+ST V E+YCK CY
Sbjct: 114 FGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYA 173
Query: 64 KKYGPKGYGYG 74
K +GP G G+G
Sbjct: 174 KNFGPTGIGFG 184
>gi|4502893 cysteine and glycine-rich protein 3 [Homo sapiens]
Length = 194
Score = 206 bits (525), Expect = 4e-54
Identities = 92/138 (66%), Positives = 107/138 (77%), Gaps = 1/138 (0%)
Query: 1 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKS 60
MPNWGGG KCG C+KTVY AEE+QC G SFHK+CF CM C+K LDSTTVA H EIYCK
Sbjct: 1 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKV 60
Query: 61 CYGKKYGPKGYGYGQGAGTLSTDKGESLGIKHEEAP-GHRPTTNPNASKFAQKIGGSERC 119
CYG++YGPKG GYGQGAG LSTD GE LG++ +++P R T N SKF K G SE+C
Sbjct: 61 CYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKC 120
Query: 120 PRCSQAVYAAEKVIGAGK 137
PRC ++VYAAEKV+G GK
Sbjct: 121 PRCGKSVYAAEKVMGGGK 138
Score = 80.5 bits (197), Expect = 4e-16
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 4 WGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYG 63
+G +KC C K+VY AE+V G +HK+CF C +C K+L+ST V E+YCK CY
Sbjct: 114 FGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYA 173
Query: 64 KKYGPKGYGYG 74
K +GP G G+G
Sbjct: 174 KNFGPTGIGFG 184
>gi|4503049 cysteine-rich protein 2 [Homo sapiens]
Length = 208
Score = 85.5 bits (210), Expect = 1e-17
Identities = 55/142 (38%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 9 KCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC-KSCYGKKYG 67
KC C KTVYFAE+V G +HK C C C K L A H + +C K CY +G
Sbjct: 4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG 63
Query: 68 PKGYGYGQGAGTLSTDKGESLG-----------IKHEEAPGHRPTTNPN-ASKFAQKIGG 115
PKG G GAG+ +K + G + EE P P+ AS G
Sbjct: 64 PKGVNIG-GAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGE 122
Query: 116 SERCPRCSQAVYAAEKVIGAGK 137
CPRCS+ VY AEKV GK
Sbjct: 123 PNTCPRCSKKVYFAEKVTSLGK 144
Score = 58.2 bits (139), Expect = 2e-09
Identities = 30/71 (42%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 5 GGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC-KSCYG 63
G C C K VYFAE+V G +H+ C C C K L A H + YC K CYG
Sbjct: 121 GEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYG 180
Query: 64 KKYGPKGYGYG 74
+GPKG G
Sbjct: 181 ILFGPKGVNTG 191
Score = 30.0 bits (66), Expect = 0.65
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 116 SERCPRCSQAVYAAEKVIGAGK 137
+ +CP+C + VY AEKV GK
Sbjct: 2 ASKCPKCDKTVYFAEKVSSLGK 23
>gi|116517305 cysteine-rich protein 3 [Homo sapiens]
Length = 204
Score = 69.7 bits (169), Expect = 7e-13
Identities = 46/138 (33%), Positives = 60/138 (43%), Gaps = 10/138 (7%)
Query: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC-KSCYGKKYGP 68
C CQ+ V+FAE+V G ++H+ C C C L A H YC K CYG +GP
Sbjct: 5 CPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGALFGP 64
Query: 69 KGYGYGQGAGTLSTDKGESLGIKHEEAPGH----RPTTN-PNASKFAQKI----GGSERC 119
+G G L S G +P RP T P K + G + C
Sbjct: 65 RGVNIGGVGSYLYNPPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKSPPHMKTFTGETSLC 124
Query: 120 PRCSQAVYAAEKVIGAGK 137
P C + VY AEKV+ G+
Sbjct: 125 PGCGEPVYFAEKVMSLGR 142
Score = 56.2 bits (134), Expect = 8e-09
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCK-SCYGKKYGP 68
C C + VYFAE+V G ++H+ C C C K L + + A H YC CYG +GP
Sbjct: 124 CPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVPYCHVPCYGYLFGP 183
Query: 69 KGYGYG 74
KG G
Sbjct: 184 KGVNIG 189
>gi|4503047 cysteine-rich protein 1 (intestinal) [Homo sapiens]
Length = 77
Score = 62.0 bits (149), Expect = 2e-10
Identities = 30/67 (44%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 9 KCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCK-SCYGKKYG 67
KC C K VYFAE V G +H+ C C C K L S A H + YC CY +G
Sbjct: 3 KCPKCNKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYAAMFG 62
Query: 68 PKGYGYG 74
PKG+G G
Sbjct: 63 PKGFGRG 69
Score = 28.9 bits (63), Expect = 1.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 118 RCPRCSQAVYAAEKVIGAGK 137
+CP+C++ VY AE+V GK
Sbjct: 3 KCPKCNKEVYFAERVTSLGK 22
>gi|170172518 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 3 [Homo sapiens]
Length = 966
Score = 52.0 bits (123), Expect = 2e-07
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 3 NWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVA--VHGEEIYCKS 60
N GG C CQK VY E + EG FH+SCF C C L + A + + YCK
Sbjct: 757 NLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGKFYCKP 816
Query: 61 CY 62
Y
Sbjct: 817 HY 818
Score = 30.8 bits (68), Expect = 0.38
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 108 KFAQKIGGSERCPRCSQAVYAAEKVIGAGK 137
+F Q +GGS+ C C + VY E++ GK
Sbjct: 753 EFPQNLGGSDTCYFCQKRVYVMERLSAEGK 782
>gi|209862793 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 2 [Homo sapiens]
Length = 1073
Score = 52.0 bits (123), Expect = 2e-07
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 3 NWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVA--VHGEEIYCKS 60
N GG C CQK VY E + EG FH+SCF C C L + A + + YCK
Sbjct: 881 NLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGKFYCKP 940
Query: 61 CY 62
Y
Sbjct: 941 HY 942
Score = 30.8 bits (68), Expect = 0.38
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 108 KFAQKIGGSERCPRCSQAVYAAEKVIGAGK 137
+F Q +GGS+ C C + VY E++ GK
Sbjct: 877 EFPQNLGGSDTCYFCQKRVYVMERLSAEGK 906
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 52.0 bits (123), Expect = 2e-07
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 3 NWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVA--VHGEEIYCKS 60
N GG C CQK VY E + EG FH+SCF C C L + A + + YCK
Sbjct: 757 NLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGKFYCKP 816
Query: 61 CY 62
Y
Sbjct: 817 HY 818
Score = 30.8 bits (68), Expect = 0.38
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 108 KFAQKIGGSERCPRCSQAVYAAEKVIGAGK 137
+F Q +GGS+ C C + VY E++ GK
Sbjct: 753 EFPQNLGGSDTCYFCQKRVYVMERLSAEGK 782
>gi|119372315 xin actin-binding repeat containing 2 isoform 2 [Homo
sapiens]
Length = 938
Score = 50.8 bits (120), Expect = 4e-07
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPK 69
C +CQKTVY E + + +FHKSCF C C L A +IYCK + + + K
Sbjct: 402 CILCQKTVYPMECLVADKQNFHKSCFRCHHCNSKLSLGNYASLHGQIYCKPHFKQLFKSK 461
Query: 70 GYGYGQGAG 78
G Y +G G
Sbjct: 462 G-NYDEGFG 469
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 50.4 bits (119), Expect = 5e-07
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 8 KKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAV-HGEEIYCKSCYGKKY 66
+KC VC + + +Q G S+H CF C+VC K LD V ++YC + Y K Y
Sbjct: 401 EKCCVCGHLI-LEKILQAMGKSYHPGCFRCIVCNKCLDGIPFTVDFSNQVYCVTDYHKNY 459
Query: 67 GPKGYGYGQ 75
PK GQ
Sbjct: 460 APKCAACGQ 468
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 10 CGVCQKTVYFAEEV-QCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCY 62
C C K +Y Q + +H CF+C C + L +YC+ Y
Sbjct: 338 CIKCNKGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAFYSVNGSVYCEEDY 391
>gi|13386490 LIM domain containing 2 [Homo sapiens]
Length = 127
Score = 50.4 bits (119), Expect = 5e-07
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLD-STTVAVHGEEIYCKSCYGKKYGP 68
C CQKTVY E + + FH SCF C C L + A+HG E YCK + + +
Sbjct: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHG-EFYCKPHFQQLFKS 98
Query: 69 KGYGYGQGAG 78
KG Y +G G
Sbjct: 99 KG-NYDEGFG 107
>gi|165905591 LIM domain and actin binding 1 isoform c [Homo
sapiens]
Length = 600
Score = 49.7 bits (117), Expect = 8e-07
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPK 69
C CQKTVY E + FH SCF C C L T A IYCK + + + K
Sbjct: 231 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 290
Query: 70 GYGYGQGAG 78
G Y +G G
Sbjct: 291 G-NYDEGFG 298
>gi|165905589 LIM domain and actin binding 1 isoform a [Homo
sapiens]
Length = 760
Score = 49.7 bits (117), Expect = 8e-07
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPK 69
C CQKTVY E + FH SCF C C L T A IYCK + + + K
Sbjct: 391 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 450
Query: 70 GYGYGQGAG 78
G Y +G G
Sbjct: 451 G-NYDEGFG 458
>gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens]
Length = 759
Score = 49.7 bits (117), Expect = 8e-07
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPK 69
C CQKTVY E + FH SCF C C L T A IYCK + + + K
Sbjct: 390 CVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 449
Query: 70 GYGYGQGAG 78
G Y +G G
Sbjct: 450 G-NYDEGFG 457
>gi|7662284 microtubule associated monoxygenase, calponin and LIM
domain containing 2 [Homo sapiens]
Length = 1124
Score = 48.5 bits (114), Expect = 2e-06
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 3 NWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEE--IYCK 59
N GG C C+K VY E + EG+ FH+ CF C +C L +E YCK
Sbjct: 995 NLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSICATTLRLAAYTFDCDEGKFYCK 1053
Score = 27.3 bits (59), Expect = 4.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 98 HRP---TTNPNASK----FAQKIGGSERCPRCSQAVYAAEKVIGAG 136
HRP T+P+ F +GGS+ C C + VY E++ G
Sbjct: 974 HRPKAQATSPDLESMRKSFPLNLGGSDTCYFCKKRVYVMERLSAEG 1019
>gi|47087157 nebulette non-muscle isoform [Homo sapiens]
Length = 270
Score = 47.0 bits (110), Expect = 5e-06
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 9 KCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKK 65
+C C K VY E+V C +HK CF C VCK L+ + ++ YC + Y K+
Sbjct: 4 QCARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQ 60
>gi|5453710 LIM and SH3 protein 1 [Homo sapiens]
Length = 261
Score = 45.8 bits (107), Expect = 1e-05
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPK 69
C C K VY E+V C +HK+CF C CK L+ + ++ YC + Y K+
Sbjct: 5 CARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQ---- 60
Query: 70 GYGYGQGAGTLSTDKGESLGIKHE 93
+ T+ D E+L +K +
Sbjct: 61 -------SFTMVADTPENLRLKQQ 77
>gi|37675280 ajuba isoform 2 [Homo sapiens]
Length = 121
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 27 GNSFHKSCFLCMVCKKNLDSTTVAV-HGEEIYCKSCYGKKYGPKGYGYGQ 75
G S+H CF C+VC K LD V ++YC + Y K Y PK GQ
Sbjct: 2 GKSYHPGCFRCIVCNKCLDGIPFTVDFSNQVYCVTDYHKNYAPKCAACGQ 51
>gi|228480221 four and a half LIM domains 1 isoform 4 [Homo sapiens]
Length = 194
Score = 45.1 bits (105), Expect = 2e-05
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 KCGVCQKTVYFAEE-VQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKY 66
KC C K + ++ V+ +G +HK CF C CK+ + + + GE+ YC +C+ K+
Sbjct: 100 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 158
Score = 35.0 bits (79), Expect = 0.020
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 10 CGVCQKTVYF-AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGP 68
C C+K + ++EV + +H +CF C C L + T +I C C ++ P
Sbjct: 40 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 99
Query: 69 KGYG 72
K G
Sbjct: 100 KCKG 103
>gi|228480213 four and a half LIM domains 1 isoform 2 [Homo sapiens]
Length = 280
Score = 45.1 bits (105), Expect = 2e-05
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 KCGVCQKTVYFAEE-VQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKY 66
KC C K + ++ V+ +G +HK CF C CK+ + + + GE+ YC +C+ K+
Sbjct: 100 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 158
Score = 43.1 bits (100), Expect = 7e-05
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 8 KKCGVCQKTVYF----AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYG 63
KKC C+ + + V EG S+H CF C C NL + H E++YC C
Sbjct: 219 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 278
Query: 64 K 64
K
Sbjct: 279 K 279
Score = 36.6 bits (83), Expect = 0.007
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 8 KKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCY 62
K C C K + + + + +H CF+C+ C K L ++ YC CY
Sbjct: 160 KHCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 213
Score = 35.0 bits (79), Expect = 0.020
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 10 CGVCQKTVYF-AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGP 68
C C+K + ++EV + +H +CF C C L + T +I C C ++ P
Sbjct: 40 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 99
Query: 69 KGYG 72
K G
Sbjct: 100 KCKG 103
>gi|228480211 four and a half LIM domains 1 isoform 1 [Homo sapiens]
Length = 323
Score = 45.1 bits (105), Expect = 2e-05
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 KCGVCQKTVYFAEE-VQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKY 66
KC C K + ++ V+ +G +HK CF C CK+ + + + GE+ YC +C+ K+
Sbjct: 100 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 158
Score = 43.5 bits (101), Expect = 6e-05
Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 15/141 (10%)
Query: 8 KKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYG 67
K C C K + + + + +H CF+C+ C K L ++ YC CY
Sbjct: 160 KHCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVA 218
Query: 68 PKGYGYGQGAGTLSTDKGESLGIKHEEAPGHRP----------TTNPNASKFAQKIGGSE 117
K G T K + H + +P T P+A+ + GG
Sbjct: 219 KK----CAGCKNPITGKRTVSRVSHPVSKARKPPVCHGKRLPLTLFPSANLRGRHPGGER 274
Query: 118 RCPRCSQAVYAAEKVIGAGKG 138
CP +Y + + A +G
Sbjct: 275 TCPSWVVVLYRKNRSLAAPRG 295
Score = 35.0 bits (79), Expect = 0.020
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 10 CGVCQKTVYF-AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGP 68
C C+K + ++EV + +H +CF C C L + T +I C C ++ P
Sbjct: 40 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 99
Query: 69 KGYG 72
K G
Sbjct: 100 KCKG 103
>gi|228480207 four and a half LIM domains 1 isoform 2 [Homo sapiens]
Length = 280
Score = 45.1 bits (105), Expect = 2e-05
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 KCGVCQKTVYFAEE-VQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKY 66
KC C K + ++ V+ +G +HK CF C CK+ + + + GE+ YC +C+ K+
Sbjct: 100 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 158
Score = 43.1 bits (100), Expect = 7e-05
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 8 KKCGVCQKTVYF----AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYG 63
KKC C+ + + V EG S+H CF C C NL + H E++YC C
Sbjct: 219 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 278
Query: 64 K 64
K
Sbjct: 279 K 279
Score = 36.6 bits (83), Expect = 0.007
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 8 KKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCY 62
K C C K + + + + +H CF+C+ C K L ++ YC CY
Sbjct: 160 KHCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 213
Score = 35.0 bits (79), Expect = 0.020
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 10 CGVCQKTVYF-AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGP 68
C C+K + ++EV + +H +CF C C L + T +I C C ++ P
Sbjct: 40 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 99
Query: 69 KGYG 72
K G
Sbjct: 100 KCKG 103
>gi|228480209 four and a half LIM domains 1 isoform 3 [Homo sapiens]
Length = 309
Score = 45.1 bits (105), Expect = 2e-05
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 KCGVCQKTVYFAEE-VQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKY 66
KC C K + ++ V+ +G +HK CF C CK+ + + + GE+ YC +C+ K+
Sbjct: 129 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 187
Score = 43.1 bits (100), Expect = 7e-05
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 8 KKCGVCQKTVYF----AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYG 63
KKC C+ + + V EG S+H CF C C NL + H E++YC C
Sbjct: 248 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 307
Query: 64 K 64
K
Sbjct: 308 K 308
Score = 36.6 bits (83), Expect = 0.007
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 8 KKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCY 62
K C C K + + + + +H CF+C+ C K L ++ YC CY
Sbjct: 189 KHCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 242
Score = 35.0 bits (79), Expect = 0.020
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 10 CGVCQKTVYF-AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGP 68
C C+K + ++EV + +H +CF C C L + T +I C C ++ P
Sbjct: 69 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 128
Query: 69 KGYG 72
K G
Sbjct: 129 KCKG 132
>gi|228480205 four and a half LIM domains 1 isoform 5 [Homo sapiens]
Length = 296
Score = 45.1 bits (105), Expect = 2e-05
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 KCGVCQKTVYFAEE-VQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKY 66
KC C K + ++ V+ +G +HK CF C CK+ + + + GE+ YC +C+ K+
Sbjct: 116 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 174
Score = 43.1 bits (100), Expect = 7e-05
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 8 KKCGVCQKTVYF----AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYG 63
KKC C+ + + V EG S+H CF C C NL + H E++YC C
Sbjct: 235 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 294
Query: 64 K 64
K
Sbjct: 295 K 295
Score = 36.6 bits (83), Expect = 0.007
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 8 KKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCY 62
K C C K + + + + +H CF+C+ C K L ++ YC CY
Sbjct: 176 KHCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 229
Score = 35.0 bits (79), Expect = 0.020
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 10 CGVCQKTVYF-AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGP 68
C C+K + ++EV + +H +CF C C L + T +I C C ++ P
Sbjct: 56 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 115
Query: 69 KGYG 72
K G
Sbjct: 116 KCKG 119
>gi|21361122 four and a half LIM domains 1 isoform 2 [Homo sapiens]
Length = 280
Score = 45.1 bits (105), Expect = 2e-05
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 KCGVCQKTVYFAEE-VQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKY 66
KC C K + ++ V+ +G +HK CF C CK+ + + + GE+ YC +C+ K+
Sbjct: 100 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 158
Score = 43.1 bits (100), Expect = 7e-05
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 8 KKCGVCQKTVYF----AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYG 63
KKC C+ + + V EG S+H CF C C NL + H E++YC C
Sbjct: 219 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 278
Query: 64 K 64
K
Sbjct: 279 K 279
Score = 36.6 bits (83), Expect = 0.007
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 8 KKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCY 62
K C C K + + + + +H CF+C+ C K L ++ YC CY
Sbjct: 160 KHCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCY 213
Score = 35.0 bits (79), Expect = 0.020
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 10 CGVCQKTVYF-AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGP 68
C C+K + ++EV + +H +CF C C L + T +I C C ++ P
Sbjct: 40 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSP 99
Query: 69 KGYG 72
K G
Sbjct: 100 KCKG 103
>gi|54112385 four and a half LIM domains 3 [Homo sapiens]
Length = 280
Score = 43.9 bits (102), Expect = 4e-05
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 9 KCGVCQKTVY-FAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYG 67
+C C +TV + +++ G ++H+ CFLC C++ L S + YC CY K+
Sbjct: 100 QCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 159
Query: 68 PKGYGYGQGAGTLSTDKGESLGIKHEEAPGHR 99
P+ + + TL+ G+ + + P HR
Sbjct: 160 PR---CARCSKTLTQG-----GVTYRDQPWHR 183
Score = 39.7 bits (91), Expect = 8e-04
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 10 CGVCQKTV-YFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGP 68
C CQ+ + + + E+ E FH+ CF C C+++L E+ C CY +
Sbjct: 40 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSS 99
Query: 69 KGYGYGQGA--GTLSTDKGESLGIKH-------EEAPGHRPTTNPNASKFAQKIGGSERC 119
+ G+ G+ + G +H E+ G R + + ++
Sbjct: 100 QCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 159
Query: 120 PRCSQ 124
PRC++
Sbjct: 160 PRCAR 164
Score = 38.5 bits (88), Expect = 0.002
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 9 KCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGP 68
+C C KT+ V +H+ C +C C+ L E+ YC +C+G+ + P
Sbjct: 161 RCARCSKTLTQGG-VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAP 219
Query: 69 K 69
K
Sbjct: 220 K 220
Score = 32.7 bits (73), Expect = 0.100
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 9 KCGVCQKTVYF---AEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSC 61
KC C++ + + V E +H +CF C C +L G+++ C+ C
Sbjct: 220 KCSSCKRPIVGLGGGKYVSFEDRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGC 275
>gi|46049092 nebulin-related anchoring protein isoform C [Homo
sapiens]
Length = 1695
Score = 43.5 bits (101), Expect = 6e-05
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC 58
C C VY AE++ C +HK+CF C VCK L H ++ YC
Sbjct: 6 CSRCGYGVYPAEKISCIDQIWHKACFHCEVCKMMLSVNNFVSHQKKPYC 54
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,679,882
Number of Sequences: 37866
Number of extensions: 334051
Number of successful extensions: 1236
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 365
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.