Guide to the Human Genome
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Name: CSRP1 Sequence: fasta or formatted (140aa) NCBI GI: 221316627
Description:

cysteine and glycine-rich protein 1 isoform 2

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [193aa] cysteine and glycine-rich protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         10           2
 C cysteine            7.1         10           1
 D aspartate           1.4          2           1
 E glutamate           7.1         10           2
 F phenylalanine       3.6          5           1
 G glycine            15.0         21           3
 H histidine           2.9          4           1
 I isoleucine          2.9          4           1
 K lysine             11.4         16           2
 L leucine             3.6          5           1
 M methionine          1.4          2           1
 N asparagine          3.6          5           1
 P proline             4.3          6           1
 Q glutamine           3.6          5           1
 R arginine            2.1          3           1
 S serine              6.4          9           1
 T threonine           5.0          7           2
 V valine              5.7          8           1
 W tryptophan          0.7          1           1
 Y tyrosine            5.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cysteine and glycine-rich protein 1 isoform 2 [Homo... 
CSRP1                 0.979   cysteine and glycine-rich protein 1 isoform 1 
CSRP2                 0.771   cysteine and glycine-rich protein 2 
CSRP3                 0.646   cysteine and glycine-rich protein 3 
CSRP3                 0.646   cysteine and glycine-rich protein 3 
CRIP2                 0.218   cysteine-rich protein 2 
CRIP3                 0.161   cysteine-rich protein 3 
CRIP1                 0.132   cysteine-rich protein 1 (intestinal) 
MICAL3                0.096   microtubule associated monoxygenase, calponin and L...
MICAL3                0.096   microtubule associated monoxygenase, calponin and L...
MICAL3                0.096   microtubule associated monoxygenase, calponin and L...
XIRP2                 0.093   xin actin-binding repeat containing 2 isoform 2 [Ho...
JUB                   0.089   ajuba isoform 1 
LIMD2                 0.089   LIM domain containing 2 
LIMA1                 0.089   LIM domain and actin binding 1 isoform c 
LIMA1                 0.089   LIM domain and actin binding 1 isoform a 
LIMA1                 0.089   LIM domain and actin binding 1 isoform b 
MICAL2                0.086   microtubule associated monoxygenase, calponin and LIM...
NEBL                  0.079   nebulette non-muscle isoform 
LASP1                 0.075   LIM and SH3 protein 1 
JUB                   0.071   ajuba isoform 2 
FHL1                  0.071   four and a half LIM domains 1 isoform 4 
FHL1                  0.071   four and a half LIM domains 1 isoform 2 
FHL1                  0.071   four and a half LIM domains 1 isoform 1 
FHL1                  0.071   four and a half LIM domains 1 isoform 2 
FHL1                  0.071   four and a half LIM domains 1 isoform 3 
FHL1                  0.071   four and a half LIM domains 1 isoform 5 
FHL1                  0.071   four and a half LIM domains 1 isoform 2 
FHL3                  0.068   four and a half LIM domains 3 
NRAP                  0.068   nebulin-related anchoring protein isoform C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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