Guide to the Human Genome
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Name: JUB Sequence: fasta or formatted (121aa) NCBI GI: 37675280
Description:

ajuba isoform 2

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [538aa] ajuba isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          5           2
 C cysteine           13.2         16           3
 D aspartate           7.4          9           1
 E glutamate           5.0          6           2
 F phenylalanine       4.1          5           1
 G glycine             6.6          8           1
 H histidine           5.8          7           1
 I isoleucine          5.0          6           1
 K lysine              3.3          4           1
 L leucine             5.8          7           2
 M methionine          3.3          4           1
 N asparagine          4.1          5           1
 P proline             6.6          8           2
 Q glutamine           4.1          5           1
 R arginine            5.0          6           1
 S serine              4.1          5           1
 T threonine           1.7          2           1
 V valine              5.0          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ajuba isoform 2 
JUB                   1.000   ajuba isoform 1 
LIMD1                 0.668   LIM domains containing 1 
WTIP                  0.652   Wilms tumor 1 interacting protein 
TRIP6                 0.488   thyroid receptor-interacting protein 6 
LPP                   0.480   LIM domain containing preferred translocation partner...
ZYX                   0.453   zyxin 
ZYX                   0.453   zyxin 
FBLIM1                0.348   filamin-binding LIM protein-1 isoform c 
FBLIM1                0.348   filamin-binding LIM protein-1 isoform a 
FHL1                  0.125   four and a half LIM domains 1 isoform 2 
FHL1                  0.125   four and a half LIM domains 1 isoform 2 
FHL1                  0.125   four and a half LIM domains 1 isoform 3 
FHL1                  0.125   four and a half LIM domains 1 isoform 5 
FHL1                  0.125   four and a half LIM domains 1 isoform 2 
LPXN                  0.117   leupaxin isoform 1 
LPXN                  0.117   leupaxin isoform 2 
LIMS2                 0.117   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.117   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.117   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.117   LIM and senescent cell antigen-like domains 2 isofor...
FHL2                  0.113   four and a half LIM domains 2 
FHL2                  0.113   four and a half LIM domains 2 
FHL2                  0.113   four and a half LIM domains 2 
FHL2                  0.113   four and a half LIM domains 2 
PXN                   0.113   paxillin isoform 3 
PXN                   0.113   paxillin isoform 2 
PXN                   0.113   paxillin isoform 1 
LOC100288695          0.113   PREDICTED: hypothetical protein XP_002342298 
LIMS1                 0.113   LIM and senescent cell antigen-like domains 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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