Guide to the Human Genome
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Name: ABCA7 Sequence: fasta or formatted (2146aa) NCBI GI: 150417984
Description:

ATP-binding cassette, sub-family A, member 7

Referenced in:

ATP-binding Cassette Proteins
Macrophages and Monocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3        199           3
 C cysteine            1.7         36           3
 D aspartate           4.1         87           2
 E glutamate           5.5        119           2
 F phenylalanine       4.3         92           3
 G glycine             8.5        183           2
 H histidine           2.4         51           2
 I isoleucine          2.1         44           1
 K lysine              2.3         50           2
 L leucine            15.4        330           7
 M methionine          1.9         40           1
 N asparagine          2.1         44           2
 P proline             7.1        152           4
 Q glutamine           4.0         86           2
 R arginine            7.0        150           3
 S serine              6.8        147           2
 T threonine           4.6         99           3
 V valine              7.5        162           2
 W tryptophan          1.6         35           1
 Y tyrosine            1.9         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family A, member 7 
ABCA1                 0.474   ATP-binding cassette, sub-family A member 1 
ABCA4                 0.402   ATP-binding cassette, sub-family A member 4 
ABCA2                 0.289   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.289   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA12                0.233   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA12                0.233   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA13                0.224   ATP binding cassette, sub-family A (ABC1), member 13...
ABCA3                 0.110   ATP-binding cassette, sub-family A member 3 
ABCA9                 0.060   ATP-binding cassette, sub-family A, member 9 
ABCA10                0.059   ATP-binding cassette, sub-family A, member 10 [Homo...
ABCA5                 0.057   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.057   ATP-binding cassette, sub-family A , member 5 
ABCA6                 0.054   ATP-binding cassette, sub-family A, member 6 
ABCA8                 0.047   ATP-binding cassette, sub-family A member 8 
LOC342293             0.030   PREDICTED: similar to hCG18626 
LOC342293             0.030   PREDICTED: similar to hCG18626 
LOC342293             0.030   PREDICTED: similar to hCG18626 
ABCB1                 0.015   ATP-binding cassette, subfamily B, member 1 
ABCB11                0.014   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB4                 0.014   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.014   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCB4                 0.013   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB5                 0.013   ATP-binding cassette, sub-family B, member 5 
ABCG1                 0.013   ATP-binding cassette sub-family G member 1 isoform 7...
ABCG1                 0.013   ATP-binding cassette sub-family G member 1 isoform 6...
ABCG1                 0.013   ATP-binding cassette sub-family G member 1 isoform 5...
ABCG1                 0.013   ATP-binding cassette sub-family G member 1 isoform 3...
ABCG1                 0.013   ATP-binding cassette sub-family G member 1 isoform 4...
ABCG1                 0.013   ATP-binding cassette sub-family G member 1 isoform 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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