Guide to the Human Genome
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Name: ABCC6 Sequence: fasta or formatted (99aa) NCBI GI: 118582251
Description:

URG7 protein isoform 2

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt prot [1503aa] ATP-binding cassette, sub-family C, member 6 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         10           2
 C cysteine            2.0          2           1
 D aspartate           0.0          0           0
 E glutamate           4.0          4           1
 F phenylalanine       3.0          3           1
 G glycine            11.1         11           1
 H histidine           3.0          3           3
 I isoleucine          3.0          3           1
 K lysine              3.0          3           1
 L leucine            12.1         12           2
 M methionine          4.0          4           1
 N asparagine          3.0          3           1
 P proline            10.1         10           2
 Q glutamine           3.0          3           1
 R arginine            5.1          5           1
 S serine              5.1          5           1
 T threonine           4.0          4           1
 V valine              7.1          7           1
 W tryptophan          4.0          4           1
 Y tyrosine            3.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   URG7 protein isoform 2 
ABCC6                 0.729   ATP-binding cassette, sub-family C, member 6 isofor...
ABCC1                 0.170   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.170   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.170   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.170   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.170   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC3                 0.170   ATP-binding cassette, sub-family C, member 3 isofor...
ABCC3                 0.170   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC2                 0.064   ATP-binding cassette, sub-family C (CFTR/MRP), member...
FLJ23584              0.011   hypothetical FLJ23584 
LENG8                 0.011   leukocyte receptor cluster member 8 
ACSF2                 0.011   acyl-CoA synthetase family member 2 
OR52B2                0.005   olfactory receptor, family 52, subfamily B, member 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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