Guide to the Human Genome
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Name: ABCC5 Sequence: fasta or formatted (208aa) NCBI GI: 66529093
Description:

ATP-binding cassette, sub-family C, member 5 isoform 2

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt prot [1437aa] ATP-binding cassette, sub-family C, member 5 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         12           2
 C cysteine            2.9          6           1
 D aspartate           5.8         12           1
 E glutamate           7.7         16           2
 F phenylalanine       2.9          6           1
 G glycine             5.8         12           1
 H histidine           4.3          9           2
 I isoleucine          5.3         11           2
 K lysine              4.8         10           2
 L leucine            10.6         22           1
 M methionine          2.4          5           1
 N asparagine          1.9          4           1
 P proline             3.8          8           1
 Q glutamine           2.9          6           1
 R arginine            9.6         20           2
 S serine             11.1         23           2
 T threonine           4.8         10           2
 V valine              4.3          9           2
 W tryptophan          1.9          4           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family C, member 5 isoform... 
ABCC5                 0.945   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC12                0.147   ATP-binding cassette protein C12 
ABCC11                0.130   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.130   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.130   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC4                 0.035   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC4                 0.035   ATP-binding cassette, sub-family C, member 4 isofor...
CFTR                  0.030   cystic fibrosis transmembrane conductance regulator ...
ABCC3                 0.025   ATP-binding cassette, sub-family C, member 3 isofor...
ABCC3                 0.025   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC6                 0.022   ATP-binding cassette, sub-family C, member 6 isofor...
LOC100292715          0.022   PREDICTED: hypothetical protein 
ABCC1                 0.020   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.020   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.020   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.020   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.020   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC2                 0.017   ATP-binding cassette, sub-family C (CFTR/MRP), member...
CHD3                  0.012   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.012   chromodomain helicase DNA binding protein 3 isoform...
ABCC8                 0.010   ATP-binding cassette, sub-family C, member 8 
CLTCL1                0.010   clathrin, heavy polypeptide-like 1 isoform 2 
CLTCL1                0.010   clathrin, heavy polypeptide-like 1 isoform 1 
ABCC9                 0.007   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.007   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.007   ATP-binding cassette, sub-family C, member 9 isofor...
LGR6                  0.007   leucine-rich repeat-containing G protein-coupled rec...
LOC100289819          0.007   PREDICTED: hypothetical protein XP_002347589 
NPIPL1                0.007   PREDICTED: nuclear pore complex interacting protein...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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