Guide to the Human Genome
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Name: EFCAB7 Sequence: fasta or formatted (629aa) NCBI GI: 217035144
Description:

EF-hand calcium binding domain 7

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         28           2
 C cysteine            3.0         19           1
 D aspartate           5.6         35           2
 E glutamate           8.3         52           3
 F phenylalanine       4.3         27           2
 G glycine             4.6         29           1
 H histidine           1.7         11           1
 I isoleucine          6.4         40           2
 K lysine              8.4         53           2
 L leucine             9.5         60           2
 M methionine          2.7         17           1
 N asparagine          5.7         36           2
 P proline             4.1         26           1
 Q glutamine           3.3         21           1
 R arginine            4.3         27           1
 S serine              7.5         47           2
 T threonine           6.8         43           2
 V valine              4.6         29           1
 W tryptophan          1.4          9           1
 Y tyrosine            3.2         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EF-hand calcium binding domain 7 
CALM3                 0.029   calmodulin 3 
CALM2                 0.029   calmodulin 2 
CALM1                 0.029   calmodulin 1 
CETN2                 0.027   caltractin 
CALML4                0.025   calmodulin-like 4 isoform 1 
CETN1                 0.023   centrin 1 
CALML3                0.023   calmodulin-like 3 
TNNC1                 0.021   troponin C, slow 
CALML5                0.020   calmodulin-like 5 
CABP5                 0.020   calcium binding protein 5 
TNNC2                 0.019   fast skeletal muscle troponin C 
MYL12A                0.019   myosin, light chain 12A, regulatory, non-sarcomeric [...
MYL12B                0.018   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.018   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.018   myosin regulatory light chain MRCL2 isoform A 
MYL12B                0.018   myosin regulatory light chain MRCL2 isoform B [Homo...
MYL9                  0.018   myosin regulatory light chain 9 isoform a 
LOC391722             0.017   PREDICTED: similar to myosin regulatory light chain...
LOC391722             0.017   PREDICTED: similar to myosin regulatory light chain ...
LOC391722             0.017   PREDICTED: similar to myosin regulatory light chain ...
CETN3                 0.017   centrin 3 
CALML4                0.016   calmodulin-like 4 isoform 2 
MYL5                  0.014   myosin regulatory light chain 5 
SLC25A24              0.014   solute carrier family 25 member 24 isoform 2 
SLC25A24              0.013   solute carrier family 25 member 24 isoform 1 
CABP2                 0.013   calcium binding protein 2 isoform 2 
CABP2                 0.013   calcium binding protein 2 isoform 1 
CABP1                 0.012   calcium binding protein 1 isoform 3 
CABP1                 0.012   calcium binding protein 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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