Guide to the Human Genome
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Name: LOC391722 Sequence: fasta or formatted (377aa) NCBI GI: 88981341
Description:

PREDICTED: similar to myosin regulatory light chain MRCL2

Referenced in:

Myosin

Other entries for this name:
alt prot [377aa] PREDICTED: similar to myosin regulatory light chain MRCL2
alt mRNA [377aa] PREDICTED: similar to myosin regulatory light chain MRCL2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         25           1
 C cysteine            3.7         14           3
 D aspartate           5.6         21           2
 E glutamate           6.9         26           2
 F phenylalanine       5.0         19           1
 G glycine             8.0         30           2
 H histidine           2.7         10           2
 I isoleucine          2.7         10           1
 K lysine              6.4         24           2
 L leucine             7.2         27           3
 M methionine          2.4          9           1
 N asparagine          4.8         18           1
 P proline             5.3         20           2
 Q glutamine           4.8         18           1
 R arginine            7.4         28           2
 S serine              8.0         30           2
 T threonine           4.2         16           2
 V valine              5.3         20           2
 W tryptophan          1.3          5           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to myosin regulatory light chain ... 
LOC391722             1.000   PREDICTED: similar to myosin regulatory light chain ...
LOC391722             0.993   PREDICTED: similar to myosin regulatory light chain...
MYL12B                0.368   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.368   myosin regulatory light chain MRCL2 isoform A [Homo...
MYL12B                0.368   myosin regulatory light chain MRCL2 isoform A 
MYL12A                0.359   myosin, light chain 12A, regulatory, non-sarcomeric [...
MYL9                  0.348   myosin regulatory light chain 9 isoform a 
MYL12B                0.340   myosin regulatory light chain MRCL2 isoform B [Homo...
MYL2                  0.187   slow cardiac myosin regulatory light chain 2 
MYL5                  0.179   myosin regulatory light chain 5 
MYLPF                 0.173   myosin light chain, phosphorylatable, fast skeletal ...
MYL7                  0.160   myosin light chain 2a 
MYL10                 0.154   myosin, light chain 10, regulatory 
CALM3                 0.120   calmodulin 3 
CALM2                 0.120   calmodulin 2 
CALM1                 0.120   calmodulin 1 
MYL9                  0.118   myosin regulatory light chain 9 isoform b 
CALML3                0.108   calmodulin-like 3 
CALML4                0.070   calmodulin-like 4 isoform 1 
CETN1                 0.068   centrin 1 
CETN2                 0.063   caltractin 
MYL6B                 0.062   smooth muscle and non-muscle myosin alkali light chai...
TNNC2                 0.062   fast skeletal muscle troponin C 
CALML5                0.059   calmodulin-like 5 
MYL6                  0.054   myosin, light chain 6, alkali, smooth muscle and non...
TNNC1                 0.053   troponin C, slow 
MYL1                  0.053   fast skeletal myosin alkali light chain 1 isoform 3f...
MYL6                  0.051   myosin, light chain 6, alkali, smooth muscle and non...
MYL1                  0.051   fast skeletal myosin alkali light chain 1 isoform 1f...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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