Guide to the Human Genome
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Name: C16orf89 Sequence: fasta or formatted (440aa) NCBI GI: 148664240
Description:

hypothetical protein LOC146556 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {399aa} hypothetical protein LOC146556 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         31           2
 C cysteine            2.5         11           1
 D aspartate           4.1         18           1
 E glutamate           6.4         28           2
 F phenylalanine       4.5         20           2
 G glycine             8.0         35           3
 H histidine           1.8          8           2
 I isoleucine          3.2         14           1
 K lysine              3.2         14           1
 L leucine            14.5         64           7
 M methionine          2.5         11           2
 N asparagine          1.6          7           1
 P proline             5.9         26           2
 Q glutamine           6.4         28           2
 R arginine            7.0         31           2
 S serine              9.1         40           3
 T threonine           3.4         15           1
 V valine              3.9         17           1
 W tryptophan          2.3         10           1
 Y tyrosine            2.7         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC146556 isoform 1 
C16orf89              0.805   hypothetical protein LOC146556 isoform 2 
LOC100128260          0.092   PREDICTED: hCG_1742852 
LOC100128260          0.092   PREDICTED: hCG_1742852 
LOC100288773          0.089   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.089   PREDICTED: hCG_1742852 
UTY                   0.073   tetratricopeptide repeat protein isoform 1 
LOC100128682          0.062   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.062   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.062   PREDICTED: hypothetical protein LOC100128682 
ZNF283                0.045   zinc finger protein 283 
MAP3K15               0.041   mitogen-activated protein kinase kinase kinase 15 [...
ITGB1                 0.040   integrin beta 1 isoform 1C-1 precursor 
CNGA1                 0.037   cyclic nucleotide gated channel alpha 1 isoform 1 [...
PPIL3                 0.037   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
BEND2                 0.037   BEN domain containing 2 
SEPSECS               0.036   Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...
CSF2RA                0.033   colony stimulating factor 2 receptor alpha chain is...
ITGB1                 0.031   integrin beta 1 isoform 1C-2 precursor 
STAP2                 0.031   signal transducing adaptor family member 2 isoform 1...
SLC39A14              0.030   solute carrier family 39 (zinc transporter), member...
ZNF573                0.029   zinc finger protein 573 
RPP30                 0.026   ribonuclease P/MRP 30kDa subunit isoform a 
RUNDC2B               0.025   RUN domain containing 2B 
EFCAB5                0.024   EF-hand calcium binding domain 5 isoform b 
SLC3A2                0.022   solute carrier family 3, member 2 isoform a 
REL                   0.022   v-rel reticuloendotheliosis viral oncogene homolog [H...
CD55                  0.022   decay accelerating factor for complement isoform 2 ...
PODXL                 0.022   podocalyxin-like isoform 1 precursor 
SUGT1                 0.022   suppressor of G2 allele of SKP1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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