Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C13orf28 Sequence: fasta or formatted (195aa) NCBI GI: 21687032
Description:

hypothetical protein LOC122258

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          8           1
 C cysteine            1.5          3           2
 D aspartate           4.6          9           1
 E glutamate           9.7         19           1
 F phenylalanine       2.1          4           1
 G glycine             6.7         13           2
 H histidine           2.1          4           1
 I isoleucine          5.6         11           1
 K lysine              4.1          8           1
 L leucine             9.7         19           3
 M methionine          1.5          3           1
 N asparagine          7.2         14           1
 P proline             5.6         11           1
 Q glutamine           7.7         15           2
 R arginine            3.6          7           2
 S serine             12.8         25           2
 T threonine           5.6         11           2
 V valine              3.1          6           1
 W tryptophan          0.5          1           1
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC122258 
HELZ                  0.019   helicase with zinc finger domain 
LUZP4                 0.019   leucine zipper protein 4 
TTLL7                 0.016   tubulin tyrosine ligase-like family, member 7 
CEP110                0.016   centrosomal protein 110kDa 
ZRANB2                0.014   zinc finger protein 265 isoform 1 
ZRANB2                0.014   zinc finger protein 265 isoform 2 
BIN2                  0.014   bridging integrator 2 
MUC16                 0.014   mucin 16 
EHBP1                 0.014   EH domain binding protein 1 isoform 1 
CTTNBP2               0.014   cortactin binding protein 2 
FGFR1                 0.011   fibroblast growth factor receptor 1 isoform 9 precur...
TET2                  0.011   tet oncogene family member 2 isoform b 
TET2                  0.011   tet oncogene family member 2 isoform a 
SF1                   0.011   splicing factor 1 isoform 3 
SF1                   0.011   splicing factor 1 isoform 2 
SF1                   0.011   splicing factor 1 isoform 1 
TPR                   0.011   nuclear pore complex-associated protein TPR 
CCNT2                 0.011   cyclin T2 isoform b 
DMP1                  0.008   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.008   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
ANKRD62               0.008   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.008   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.008   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
ZNF454                0.008   zinc finger protein 454 
TCF4                  0.008   transcription factor 4 isoform a 
PRG4                  0.008   proteoglycan 4 isoform D 
PRG4                  0.008   proteoglycan 4 isoform C 
PRG4                  0.008   proteoglycan 4 isoform B 
PRG4                  0.008   proteoglycan 4 isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press