Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TET2 Sequence: fasta or formatted (2002aa) NCBI GI: 187761317
Description:

tet oncogene family member 2 isoform a

Referenced in:

Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [1165aa] tet oncogene family member 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6        112           3
 C cysteine            2.2         45           1
 D aspartate           3.0         61           2
 E glutamate           7.1        143           3
 F phenylalanine       2.6         53           2
 G glycine             5.1        103           2
 H histidine           4.2         84           3
 I isoleucine          2.8         57           2
 K lysine              6.8        136           2
 L leucine             8.0        160           3
 M methionine          2.1         42           1
 N asparagine          6.1        123           2
 P proline             7.7        155           4
 Q glutamine           8.8        177           5
 R arginine            3.9         78           2
 S serine             10.1        202           3
 T threonine           6.0        121           3
 V valine              4.2         85           2
 W tryptophan          0.4          9           1
 Y tyrosine            2.8         56           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tet oncogene family member 2 isoform a 
TET2                  0.564   tet oncogene family member 2 isoform b 
TET3                  0.142   tet oncogene family member 3 
TET1                  0.122   CXXC finger 6 
ARID1A                0.009   AT rich interactive domain 1A isoform a 
ARID1A                0.009   AT rich interactive domain 1A isoform b 
ZNF853                0.007   zinc finger protein 853 
MAML2                 0.007   mastermind-like 2 
XIRP2                 0.007   xin actin-binding repeat containing 2 isoform 1 [Ho...
PAXIP1                0.007   PAX interacting protein 1 
TOX3                  0.006   TOX high mobility group box family member 3 isoform...
TOX3                  0.006   TOX high mobility group box family member 3 isoform...
MEF2D                 0.006   myocyte enhancer factor 2D 
MAML3                 0.006   mastermind-like 3 
MLL2                  0.006   myeloid/lymphoid or mixed-lineage leukemia 2 
MED15                 0.006   mediator complex subunit 15 isoform b 
DENND4B               0.005   DENN/MADD domain containing 4B 
BAT2D1                0.005   HBxAg transactivated protein 2 
MED15                 0.005   mediator complex subunit 15 isoform a 
IVL                   0.005   involucrin 
FUS                   0.005   fusion (involved in t(12;16) in malignant liposarcoma...
MED12                 0.005   mediator complex subunit 12 
GOLGA3                0.005   Golgi autoantigen, golgin subfamily a, 3 
KIAA2018              0.005   hypothetical protein LOC205717 
TNRC6A                0.005   trinucleotide repeat containing 6A 
RBM33                 0.005   RNA binding motif protein 33 
POU6F2                0.004   POU domain, class 6, transcription factor 2 
KCNN3                 0.004   small conductance calcium-activated potassium chann...
BRD4                  0.004   bromodomain-containing protein 4 isoform long 
YTHDF3                0.004   YTH domain family, member 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press