Guide to the Human Genome
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Name: C1orf66 Sequence: fasta or formatted (277aa) NCBI GI: 216548564
Description:

hypothetical protein LOC51093 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {475aa} hypothetical protein LOC51093 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         25           2
 C cysteine            2.9          8           1
 D aspartate           3.2          9           1
 E glutamate           6.1         17           2
 F phenylalanine       3.2          9           2
 G glycine            10.8         30           2
 H histidine           1.4          4           1
 I isoleucine          2.5          7           2
 K lysine              4.0         11           2
 L leucine            12.3         34           2
 M methionine          2.2          6           1
 N asparagine          1.4          4           1
 P proline             7.9         22           2
 Q glutamine           5.1         14           1
 R arginine            6.9         19           2
 S serine              7.6         21           2
 T threonine           6.1         17           1
 V valine              4.7         13           2
 W tryptophan          1.1          3           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC51093 isoform 2 
C1orf66               0.743   hypothetical protein LOC51093 isoform 1 
C12orf26              0.067   hypothetical protein LOC84190 
MSLNL                 0.028   mesothelin-like 
HOXA13                0.020   homeobox A13 
BSN                   0.020   bassoon protein 
HABP4                 0.019   hyaluronan binding protein 4 
MXRA7                 0.017   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.017   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.017   transmembrane anchor protein 1 isoform 1 
PLEKHA6               0.017   phosphoinositol 3-phosphate-binding protein-3 
TSKS                  0.017   testis-specific kinase substrate 
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.017   SWI/SNF-related matrix-associated actin-dependent r...
COL2A1                0.015   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.015   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100290372          0.013   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.013   PREDICTED: hypothetical protein XP_002342652 
FIZ1                  0.013   FLT3-interacting zinc finger 1 
FMNL1                 0.013   formin-like 1 
LOC100293975          0.013   PREDICTED: hypothetical protein 
LOC100290812          0.013   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.013   PREDICTED: hypothetical protein XP_002343496 
FLJ10357              0.013   hypothetical protein LOC55701 
SPOCD1                0.013   SPOC domain containing 1 
COL1A1                0.013   alpha 1 type I collagen preproprotein 
MAPK7                 0.013   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.013   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.013   mitogen-activated protein kinase 7 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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