Guide to the Human Genome
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Name: C1orf66 Sequence: fasta or formatted (475aa) NCBI GI: 216548560
Description:

hypothetical protein LOC51093 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {277aa} hypothetical protein LOC51093 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         38           2
 C cysteine            2.5         12           2
 D aspartate           2.9         14           1
 E glutamate           7.6         36           2
 F phenylalanine       2.7         13           2
 G glycine             6.9         33           2
 H histidine           2.9         14           2
 I isoleucine          2.3         11           2
 K lysine              3.2         15           2
 L leucine            17.1         81           3
 M methionine          1.7          8           1
 N asparagine          1.7          8           1
 P proline             6.9         33           2
 Q glutamine           5.5         26           1
 R arginine            8.0         38           2
 S serine              5.5         26           2
 T threonine           4.0         19           1
 V valine              7.2         34           2
 W tryptophan          1.1          5           1
 Y tyrosine            2.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC51093 isoform 1 
C1orf66               0.431   hypothetical protein LOC51093 isoform 2 
C12orf26              0.076   hypothetical protein LOC84190 
MSLNL                 0.011   mesothelin-like 
TRIM6                 0.008   tripartite motif-containing 6 isoform 2 
TRIM6                 0.008   tripartite motif-containing 6 isoform 1 
TRIM6-TRIM34          0.008   tripartite motif-containing 6 and tripartite motif-c...
FMNL1                 0.006   formin-like 1 
AKAP9                 0.004   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.004   A-kinase anchor protein 9 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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