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Search of human proteins with 215272412
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo
sapiens]
(397 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 818 0.0
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 818 0.0
gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens] 780 0.0
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens] 750 0.0
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens] 716 0.0
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens] 646 0.0
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens] 475 e-134
gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens] 468 e-132
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens] 461 e-130
gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens] 461 e-130
gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens] 459 e-129
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens] 358 5e-99
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens] 353 1e-97
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 63 4e-10
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 63 4e-10
gi|37574731 boule isoform 1 [Homo sapiens] 62 9e-10
gi|14719414 boule isoform 2 [Homo sapiens] 61 2e-09
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 59 6e-09
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 59 6e-09
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 59 6e-09
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 59 8e-09
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 59 1e-08
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 59 1e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 58 2e-08
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 57 2e-08
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 57 2e-08
gi|189181654 deleted in azoospermia [Homo sapiens] 56 5e-08
gi|62244004 modulator of estrogen induced transcription isoform ... 56 5e-08
gi|63176611 modulator of estrogen induced transcription isoform ... 56 5e-08
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens] 56 7e-08
>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 818 bits (2113), Expect = 0.0
Identities = 397/397 (100%), Positives = 397/397 (100%)
Query: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE
Sbjct: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
Query: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH
Sbjct: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
Query: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV
Sbjct: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
Query: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240
VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM
Sbjct: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240
Query: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300
YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY
Sbjct: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300
Query: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360
QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF
Sbjct: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360
Query: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 818 bits (2113), Expect = 0.0
Identities = 397/397 (100%), Positives = 397/397 (100%)
Query: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE
Sbjct: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
Query: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH
Sbjct: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
Query: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV
Sbjct: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
Query: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240
VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM
Sbjct: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240
Query: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300
YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY
Sbjct: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300
Query: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360
QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF
Sbjct: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360
Query: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
Length = 418
Score = 780 bits (2013), Expect = 0.0
Identities = 381/391 (97%), Positives = 385/391 (98%), Gaps = 1/391 (0%)
Query: 8 LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 28 IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
Query: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 247
VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
Query: 248 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 307
VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+ YG
Sbjct: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
Query: 308 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 366
+ GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA
Sbjct: 328 KLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 387
Query: 367 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
KTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 388 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
Length = 370
Score = 750 bits (1937), Expect = 0.0
Identities = 369/397 (92%), Positives = 370/397 (93%), Gaps = 27/397 (6%)
Query: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE
Sbjct: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
Query: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH
Sbjct: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
Query: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV
Sbjct: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
Query: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240
VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY
Sbjct: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY---------------- 224
Query: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300
A+PGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY
Sbjct: 225 -----------AVPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 273
Query: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360
QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF
Sbjct: 274 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 333
Query: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 334 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
Length = 392
Score = 716 bits (1848), Expect = 0.0
Identities = 355/391 (90%), Positives = 359/391 (91%), Gaps = 27/391 (6%)
Query: 8 LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 28 IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
Query: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 247
VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
Query: 248 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 307
VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+ YG
Sbjct: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
Query: 308 DIY-GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 366
+ GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAM
Sbjct: 328 KLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAM--------- 378
Query: 367 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
ASIYRGGYNRFAPY
Sbjct: 379 -----------------ASIYRGGYNRFAPY 392
>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
Length = 395
Score = 646 bits (1666), Expect = 0.0
Identities = 317/333 (95%), Positives = 322/333 (96%), Gaps = 1/333 (0%)
Query: 8 LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 28 IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
Query: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 247
VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
Query: 248 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 307
VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+ YG
Sbjct: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
Query: 308 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAA 339
+ GGYAAYRYAQPTPATAAAYSD V+ A
Sbjct: 328 KLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360
>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
Length = 312
Score = 475 bits (1223), Expect = e-134
Identities = 246/342 (71%), Positives = 262/342 (76%), Gaps = 35/342 (10%)
Query: 21 MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 78
MAQPY AQ+ PP QNGIPAEY P PHP +Y+GQT VP EH + LY PAQTH EQ +
Sbjct: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
Query: 79 DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 136
+ S Q ++GT T QTD+AA TD QP PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 61 EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118
Query: 137 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 196
FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178
Query: 197 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF 256
TNKKT NPYTNGWKLNPVVGAVY PEFYA T GF
Sbjct: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVT---------------------------GF 211
Query: 257 PYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAY 316
PYP A AYRGAHLRGRGR VYNTFRAA PPPPIP YG VVYQDGFYGA+IYGGYAAY
Sbjct: 212 PYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAY 271
Query: 317 RYAQPTPATAAAYSDSYGRVY-AADPYHHALAPAPTYGVGAM 357
RYAQP A AAAYSDSYGRVY AADPYHH + PA TY +G M
Sbjct: 272 RYAQPA-AAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
>gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]
Length = 451
Score = 468 bits (1203), Expect = e-132
Identities = 261/410 (63%), Positives = 283/410 (69%), Gaps = 58/410 (14%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S T +G+ TQT+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 134 STQAHGEQS--SNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 191
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 192 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 251
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 252 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 309
Query: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 310 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 368
Query: 296 GGVVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALA 347
GVVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALA
Sbjct: 369 PGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALA 427
Query: 348 PAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
PA +YGVGA+ AS+YRGGY+RFAPY
Sbjct: 428 PAASYGVGAV--------------------------ASLYRGGYSRFAPY 451
>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
Length = 450
Score = 461 bits (1186), Expect = e-130
Identities = 260/410 (63%), Positives = 280/410 (68%), Gaps = 59/410 (14%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 308
Query: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 309 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 367
Query: 296 GGVVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALA 347
GVVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALA
Sbjct: 368 PGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALA 426
Query: 348 PAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
PA +YGVGA+ AS+YRGGY+RFAPY
Sbjct: 427 PAASYGVGAV--------------------------ASLYRGGYSRFAPY 450
>gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]
Length = 380
Score = 461 bits (1186), Expect = e-130
Identities = 260/410 (63%), Positives = 280/410 (68%), Gaps = 59/410 (14%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
Query: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297
Query: 296 GGVVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALA 347
GVVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALA
Sbjct: 298 PGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALA 356
Query: 348 PAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
PA +YGVGA+ AS+YRGGY+RFAPY
Sbjct: 357 PAASYGVGAV--------------------------ASLYRGGYSRFAPY 380
>gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]
Length = 376
Score = 459 bits (1181), Expect = e-129
Identities = 259/406 (63%), Positives = 278/406 (68%), Gaps = 55/406 (13%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
Query: 247 ------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVV 299
+PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY GVV
Sbjct: 239 GRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPGVV 297
Query: 300 YQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALAPAPT 351
YQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALAPA +
Sbjct: 298 YQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALAPAAS 356
Query: 352 YGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
YGVGA+ AS+YRGGY+RFAPY
Sbjct: 357 YGVGAV--------------------------ASLYRGGYSRFAPY 376
>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
Length = 367
Score = 358 bits (919), Expect = 5e-99
Identities = 199/302 (65%), Positives = 215/302 (71%), Gaps = 19/302 (6%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S T +G+ TQT+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQS--SNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 121
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 122 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 181
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 182 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 239
Query: 247 ------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVV 299
+PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY GV
Sbjct: 240 GRGGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPGVD 298
Query: 300 YQ 301
Q
Sbjct: 299 MQ 300
>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
Length = 370
Score = 353 bits (907), Expect = 1e-97
Identities = 199/306 (65%), Positives = 214/306 (69%), Gaps = 24/306 (7%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
Query: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297
Query: 296 GGVVYQ 301
GV Q
Sbjct: 298 PGVDMQ 303
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 63.2 bits (152), Expect = 4e-10
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 48/257 (18%)
Query: 84 TVSGTATQTDDAAPTDGQPQ-TQPSENTE-----NKSQPKRLHVSNIPFRFRDPDLRQMF 137
T+ G P QP+ T+P E + + S+ ++ V IP + +LR+ F
Sbjct: 74 TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133
Query: 138 GQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195
+FG + +V +I++ ++ +GFGF+TFE+ D+A +H + G+K+EV A R
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAEPRD 192
Query: 196 MTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPG 255
++ P + W V A +AG P + G
Sbjct: 193 SKSQAPGQPGASQWGSRVVPNAANG---WAG---------------QPPPTWQQGYGPQG 234
Query: 256 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY------GGVVYQDGF---YG 306
PA A Y G GRG A PPPP +Y GG GF YG
Sbjct: 235 MWVPAGQAIGGY-GPPPAGRG--------APPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285
Query: 307 ADIYGGYAAYRYAQPTP 323
A ++ Y P P
Sbjct: 286 AP---PQFSFGYGPPPP 299
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 63.2 bits (152), Expect = 4e-10
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 48/257 (18%)
Query: 84 TVSGTATQTDDAAPTDGQPQ-TQPSENTE-----NKSQPKRLHVSNIPFRFRDPDLRQMF 137
T+ G P QP+ T+P E + + S+ ++ V IP + +LR+ F
Sbjct: 74 TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133
Query: 138 GQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195
+FG + +V +I++ ++ +GFGF+TFE+ D+A +H + G+K+EV A R
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAEPRD 192
Query: 196 MTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPG 255
++ P + W V A +AG P + G
Sbjct: 193 SKSQAPGQPGASQWGSRVVPNAANG---WAG---------------QPPPTWQQGYGPQG 234
Query: 256 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY------GGVVYQDGF---YG 306
PA A Y G GRG A PPPP +Y GG GF YG
Sbjct: 235 MWVPAGQAIGGY-GPPPAGRG--------APPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285
Query: 307 ADIYGGYAAYRYAQPTP 323
A ++ Y P P
Sbjct: 286 AP---PQFSFGYGPPPP 299
>gi|37574731 boule isoform 1 [Homo sapiens]
Length = 295
Score = 62.0 bits (149), Expect = 9e-10
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 83 QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 133
+T SG T QTD +P+ P N + + P R+ V I F+ + DL
Sbjct: 2 ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
Query: 134 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191
R+ F Q+G + +V+I+ + G SKG+GFVTFE DA + ++ + +K+ + A
Sbjct: 62 RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
>gi|14719414 boule isoform 2 [Homo sapiens]
Length = 283
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 91 QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDLRQMFGQFGKILD 145
QTD +P+ P N + + P R+ V I F+ + DLR+ F Q+G + +
Sbjct: 2 QTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKE 61
Query: 146 VEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191
V+I+ + G SKG+GFVTFE DA + ++ + +K+ + A
Sbjct: 62 VKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 108
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 59.3 bits (142), Expect = 6e-09
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 75 QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 131
Q AD + + ++G +D G+ +++ E ++ K +++ N D
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 132 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++G + G+ I V
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 191 ATARV 195
A +V
Sbjct: 266 AQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 112 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 171
++ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348
Query: 172 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 205
A +++G +V + + V A + N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 37.0 bits (84), Expect = 0.031
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
L+V ++ + L + F G +L + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 177 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 233
+ V++G+ I + + K V N + + A+Y G +L C+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 234 NQEGSSMYS 242
++ GS Y+
Sbjct: 133 DENGSKGYA 141
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 59.3 bits (142), Expect = 6e-09
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 75 QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 131
Q AD + + ++G +D G+ +++ E ++ K +++ N D
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 132 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++G + G+ I V
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 191 ATARV 195
A +V
Sbjct: 266 AQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 112 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 171
++ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348
Query: 172 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 205
A +++G +V + + V A + N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 37.0 bits (84), Expect = 0.031
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
L+V ++ + L + F G +L + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 177 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 233
+ V++G+ I + + K V N + + A+Y G +L C+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 234 NQEGSSMYS 242
++ GS Y+
Sbjct: 133 DENGSKGYA 141
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 59.3 bits (142), Expect = 6e-09
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 75 QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 131
Q AD + + ++G +D G+ +++ E ++ K +++ N D
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 132 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++G + G+ I V
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 191 ATARV 195
A +V
Sbjct: 266 AQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 112 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 171
++ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348
Query: 172 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 205
A +++G +V + + V A + N Y
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 37.0 bits (84), Expect = 0.031
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
L+V ++ + L + F G +L + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 177 HGTVVEGRKIEVNNATARVMTNKKTV-NPYTNGWKLNPVVGAVYSPEFYAGTVLLCQ--A 233
+ V++G+ I + + K V N + + A+Y G +L C+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 234 NQEGSSMYS 242
++ GS Y+
Sbjct: 133 DENGSKGYA 141
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 8e-09
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 100 GQPQTQPSENTENKSQPKR---LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-S 155
GQ +++ E ++ K +++ N D L+ +FG+FG L V+++ +E G S
Sbjct: 171 GQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 230
Query: 156 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195
KGFGFV+FE DA +A ++++G + G++I V A +V
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Score = 55.8 bits (133), Expect = 7e-08
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + V N+ + L FG IL ++ +E GSKG+GFV FE A+RA
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
+K++G ++ GRK+ V +R
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSR 176
Score = 51.2 bits (121), Expect = 2e-06
Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 12/193 (6%)
Query: 105 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 164
Q ++ + Q L+V N+ D LR+ F FG I +++ SKGFGFV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 165 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY 224
+ +A +A +++G +V + + V A + N Y V +P
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP-- 399
Query: 225 AGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF------PYPAATAAAAYRGAHLRGRGRT 278
+G + + + Y PS + P + P+P +A R G R
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIR----PGAPRV 455
Query: 279 VYNTFRAAAPPPP 291
++T R A+ P
Sbjct: 456 PFSTMRPASSQVP 468
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 58.5 bits (140), Expect = 1e-08
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 102 PQTQPSENTENKSQPKR---LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSK 156
P + + N++ P L V + + DLR++F ++G I DV I++++ R S+
Sbjct: 100 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159
Query: 157 GFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189
GF FV FEN DA A+E+ +G ++GR+I V+
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 58.5 bits (140), Expect = 1e-08
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 177
+++ N D L+ +FG+FG L V+++ +E G SKGFGFV+FE DA +A ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 178 GTVVEGRKIEVNNATARV 195
G + G++I V A +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270
Score = 57.0 bits (136), Expect = 3e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + + N+ + L F FG IL +++ +E GSKG+GFV FE A+RA
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 54.3 bits (129), Expect = 2e-07
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 16/198 (8%)
Query: 105 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 164
Q ++ + Q L+V N+ D LR+ F FG I +++ SKGFGFV F
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 165 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKL-----NPVVGAVY 219
+ +A +A +++G +V + + V A + N Y NPV+ Y
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP-Y 400
Query: 220 SPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGF------PYPAATAAAAYRGAHLR 273
P +G + + + Y PS + P + P+P A R A
Sbjct: 401 QPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA--- 457
Query: 274 GRGRTVYNTFRAAAPPPP 291
R ++T R A+ P
Sbjct: 458 -APRPPFSTMRPASSQVP 474
Score = 35.8 bits (81), Expect = 0.070
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
L+V ++ + L + F G IL + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 177 HGTVVEGRKIEV 188
+ V++G+ + +
Sbjct: 73 NFDVIKGKPVRI 84
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 57.8 bits (138), Expect = 2e-08
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 33 PQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQT 92
P+ G + P HP P + G P +PP Q P S
Sbjct: 216 PKPGGGPGLSTPGGHPKPPHRGGGE-PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISD 274
Query: 93 DDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 152
+ + +P E T +Q RL V N+P + + +++F ++G+ E+ N+
Sbjct: 275 SEGFKANLSLLRRPGEKTY--TQRCRLFVGNLPADITEDEFKRLFAKYGE--PGEVFINK 330
Query: 153 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 207
KGFGF+ E+ A A+ A+ +L T + GR++ V AT + + ++PY +
Sbjct: 331 --GKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVS 383
Score = 28.9 bits (63), Expect = 8.5
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREK 175
L V N+ + L + F QFG I +I ++RG S G G V F + A +A E+
Sbjct: 373 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 430
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 116 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 173
P RL+V ++ F + LR +F FG+I ++++ + E G SKG+GF+TF +S A +A
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 174 EKLHGTVVEGRKIEVNNATAR 194
E+L+G + GR ++V + T R
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 116 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 173
P RL+V ++ F + LR +F FG+I ++++ + E G SKG+GF+TF +S A +A
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 174 EKLHGTVVEGRKIEVNNATAR 194
E+L+G + GR ++V + T R
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329
>gi|189181654 deleted in azoospermia [Homo sapiens]
Length = 744
Score = 56.2 bits (134), Expect = 5e-08
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 42/260 (16%)
Query: 45 HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 97
+P P P++ P L P P H + + +T T+S A TQ+ AA
Sbjct: 132 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 191
Query: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 156
+ G E K P + V I R + ++ FG++G + +V+II N G SK
Sbjct: 192 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 245
Query: 157 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 204
G+GFV+F N D +K+ G+ + G+K+++ A + V VNP
Sbjct: 246 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 301
Query: 205 --YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAAT 262
+ N W+ NP P+ V + + ++ P+S + A ++
Sbjct: 302 PQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPETPNSTISREAS-----TQSS 352
Query: 263 AAAAYRGAHLRGRGRTVYNT 282
+AAA +G L G+ V NT
Sbjct: 353 SAAASQGWVL-PEGKIVPNT 371
Score = 55.8 bits (133), Expect = 7e-08
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 33/200 (16%)
Query: 45 HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 97
+P P P++ P L P P H + + +T T+S A TQ+ AA
Sbjct: 297 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 356
Query: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 156
+ G E K P + V I R + ++ FG++G + +V+II N G SK
Sbjct: 357 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 410
Query: 157 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 204
G+GFV+F N D +K+ G+ + G+K+++ A + V VNP
Sbjct: 411 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 466
Query: 205 --YTNGWKLNPVVGAVYSPE 222
+ N W+ NP P+
Sbjct: 467 PQFQNVWR-NPNTETYLQPQ 485
Score = 52.4 bits (124), Expect = 7e-07
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 36/220 (16%)
Query: 79 DTSAQTVSGTA-TQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 137
+T T+S A TQ+ AA + G E K P + V I R + ++ F
Sbjct: 7 ETPNSTISREASTQSSSAAASQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCF 60
Query: 138 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 194
G++G + +V+II N G SKG+GFV+F N D +K+ G+ + G+K+++ A +
Sbjct: 61 GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116
Query: 195 -------VMTNKKTVNP-----YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYS 242
V VNP + N W+ NP P+ V + + ++
Sbjct: 117 QKLCARHVQPRPLVVNPPPPPQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPE 172
Query: 243 APSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNT 282
P+S + A +++AAA +G L G+ V NT
Sbjct: 173 TPNSTISREAS-----TQSSSAAASQGWVL-PEGKIVPNT 206
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 56.2 bits (134), Expect = 5e-08
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 76 SPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQ 135
S S Q S + D + + S + + S K + VS + + DL+
Sbjct: 325 SSTGASGQAKSSSKESKDSKTSSKDDKGSTSSTSGSSGSSTKNIWVSGLSSNTKAADLKN 384
Query: 136 MFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
+FG++GK+L +++ N R G+K +G VT +S + R LH T + G+ I V
Sbjct: 385 LFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLISV 439
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 56.2 bits (134), Expect = 5e-08
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 76 SPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQ 135
S S Q S + D + + S + + S K + VS + + DL+
Sbjct: 343 SSTGASGQAKSSSKESKDSKTSSKDDKGSTSSTSGSSGSSTKNIWVSGLSSNTKAADLKN 402
Query: 136 MFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
+FG++GK+L +++ N R G+K +G VT +S + R LH T + G+ I V
Sbjct: 403 LFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLISV 457
>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
Length = 579
Score = 55.8 bits (133), Expect = 7e-08
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 33/200 (16%)
Query: 45 HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 97
+P P P++ P L P P H + + +T T+S A TQ+ AA
Sbjct: 132 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 191
Query: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 156
+ G E K P + V I R + ++ FG++G + +V+II N G SK
Sbjct: 192 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 245
Query: 157 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 204
G+GFV+F N D +K+ G+ + G+K+++ A + V VNP
Sbjct: 246 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 301
Query: 205 --YTNGWKLNPVVGAVYSPE 222
+ N W+ NP P+
Sbjct: 302 PQFQNVWR-NPNTETYLQPQ 320
Score = 52.4 bits (124), Expect = 7e-07
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 36/220 (16%)
Query: 79 DTSAQTVSGTA-TQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 137
+T T+S A TQ+ AA + G E K P + V I R + ++ F
Sbjct: 7 ETPNSTISREASTQSSSAAASQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCF 60
Query: 138 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 194
G++G + +V+II N G SKG+GFV+F N D +K+ G+ + G+K+++ A +
Sbjct: 61 GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116
Query: 195 -------VMTNKKTVNP-----YTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYS 242
V VNP + N W+ NP P+ V + + ++
Sbjct: 117 QKLCARHVQPRPLVVNPPPPPQFQNVWR-NPNTETYLQPQITPNPV---TQHVQSAANPE 172
Query: 243 APSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNT 282
P+S + A +++AAA +G L G+ V NT
Sbjct: 173 TPNSTISREAS-----TQSSSAAASQGWVL-PEGKIVPNT 206
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,653,258
Number of Sequences: 37866
Number of extensions: 974664
Number of successful extensions: 4715
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 312
Number of HSP's that attempted gapping in prelim test: 3758
Number of HSP's gapped (non-prelim): 1014
length of query: 397
length of database: 18,247,518
effective HSP length: 104
effective length of query: 293
effective length of database: 14,309,454
effective search space: 4192670022
effective search space used: 4192670022
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.