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Search of human proteins with 215272410
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo
sapiens]
(370 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens] 766 0.0
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 750 0.0
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 750 0.0
gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens] 712 0.0
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens] 648 0.0
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens] 578 e-165
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens] 490 e-139
gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens] 460 e-129
gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens] 454 e-128
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens] 453 e-127
gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens] 453 e-127
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens] 353 1e-97
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens] 346 2e-95
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 69 5e-12
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 69 5e-12
gi|37574731 boule isoform 1 [Homo sapiens] 64 2e-10
gi|14719414 boule isoform 2 [Homo sapiens] 63 5e-10
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 62 8e-10
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 59 5e-09
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 59 5e-09
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 59 5e-09
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 59 7e-09
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 59 9e-09
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 59 9e-09
gi|189181654 deleted in azoospermia [Homo sapiens] 58 2e-08
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens] 58 2e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 58 2e-08
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 57 2e-08
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 57 2e-08
gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens] 56 5e-08
>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
Length = 370
Score = 766 bits (1978), Expect = 0.0
Identities = 370/370 (100%), Positives = 370/370 (100%)
Query: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE
Sbjct: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
Query: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH
Sbjct: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
Query: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV
Sbjct: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
Query: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAVPGFPYPAATAAAAY 240
VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAVPGFPYPAATAAAAY
Sbjct: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAVPGFPYPAATAAAAY 240
Query: 241 RGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTPATAA 300
RGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTPATAA
Sbjct: 241 RGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTPATAA 300
Query: 301 AYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIY 360
AYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIY
Sbjct: 301 AYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIY 360
Query: 361 RGGYNRFAPY 370
RGGYNRFAPY
Sbjct: 361 RGGYNRFAPY 370
>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 750 bits (1937), Expect = 0.0
Identities = 369/397 (92%), Positives = 370/397 (93%), Gaps = 27/397 (6%)
Query: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE
Sbjct: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
Query: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH
Sbjct: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
Query: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV
Sbjct: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
Query: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY---------------- 224
VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY
Sbjct: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240
Query: 225 -----------AVPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 273
A+PGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY
Sbjct: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300
Query: 274 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 333
QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF
Sbjct: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360
Query: 334 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 750 bits (1937), Expect = 0.0
Identities = 369/397 (92%), Positives = 370/397 (93%), Gaps = 27/397 (6%)
Query: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE
Sbjct: 1 MNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPE 60
Query: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH
Sbjct: 61 HTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLH 120
Query: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV
Sbjct: 121 VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 180
Query: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY---------------- 224
VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY
Sbjct: 181 VEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSM 240
Query: 225 -----------AVPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 273
A+PGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY
Sbjct: 241 YSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVY 300
Query: 274 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 333
QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF
Sbjct: 301 QDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAF 360
Query: 334 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 361 APLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
Length = 418
Score = 712 bits (1837), Expect = 0.0
Identities = 353/391 (90%), Positives = 358/391 (91%), Gaps = 28/391 (7%)
Query: 8 LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 28 IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
Query: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY----------------------- 224
VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
Query: 225 ----AVPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 280
A+PGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+ YG
Sbjct: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
Query: 281 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 339
+ GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA
Sbjct: 328 KLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 387
Query: 340 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
KTRSHADDVGLVLSSLQASIYRGGYNRFAPY
Sbjct: 388 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
Length = 392
Score = 648 bits (1672), Expect = 0.0
Identities = 327/391 (83%), Positives = 332/391 (84%), Gaps = 54/391 (13%)
Query: 8 LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 28 IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
Query: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYA---------------------- 225
VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYA
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
Query: 226 -----VPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 280
+PGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+ YG
Sbjct: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
Query: 281 DIY-GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAMNAFAPLTDA 339
+ GGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAM
Sbjct: 328 KLLQGGYAAYRYAQPTPATAAAYSDSYGRVYAADPYHHALAPAPTYGVGAM--------- 378
Query: 340 KTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
ASIYRGGYNRFAPY
Sbjct: 379 -----------------ASIYRGGYNRFAPY 392
>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
Length = 395
Score = 578 bits (1490), Expect = e-165
Identities = 289/333 (86%), Positives = 295/333 (88%), Gaps = 28/333 (8%)
Query: 8 LRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
++GNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP
Sbjct: 28 IQGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 127
PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFR 147
Query: 128 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 187
FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Sbjct: 148 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 207
Query: 188 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY----------------------- 224
VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFY
Sbjct: 208 VNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSL 267
Query: 225 ----AVPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGA 280
A+PGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ+ YG
Sbjct: 268 VYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQEPVYGN 327
Query: 281 D-IYGGYAAYRYAQPTPATAAAYSDSYGRVYAA 312
+ GGYAAYRYAQPTPATAAAYSD V+ A
Sbjct: 328 KLLQGGYAAYRYAQPTPATAAAYSDRNQFVFVA 360
>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
Length = 312
Score = 490 bits (1262), Expect = e-139
Identities = 246/315 (78%), Positives = 262/315 (83%), Gaps = 8/315 (2%)
Query: 21 MAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVP-EHTLNLYPPAQTHSEQSPA 78
MAQPY AQ+ PP QNGIPAEY P PHP +Y+GQT VP EH + LY PAQTH EQ +
Sbjct: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
Query: 79 DTSAQTVSGTAT--QTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQM 136
+ S Q ++GT T QTD+AA TD QP PS+ TE K QPKRLHVSNIPFRFRDPDLRQM
Sbjct: 61 EASTQPIAGTQTVPQTDEAAQTDSQP-LHPSDPTE-KQQPKRLHVSNIPFRFRDPDLRQM 118
Query: 137 FGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 196
FGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARVM
Sbjct: 119 FGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVM 178
Query: 197 TNKKTVNPYTNGWKLNPVVGAVYSPEFYAVPGFPYPAATAAAAYRGAHLRGRGRTVYNTF 256
TNKKT NPYTNGWKLNPVVGAVY PEFYAV GFPYP A AYRGAHLRGRGR VYNTF
Sbjct: 179 TNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTGFPYPTTGTAVAYRGAHLRGRGRAVYNTF 238
Query: 257 RAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTPATAAAYSDSYGRVY-AADPY 315
RAA PPPPIP YG VVYQDGFYGA+IYGGYAAYRYAQP A AAAYSDSYGRVY AADPY
Sbjct: 239 RAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPA-AAAAAYSDSYGRVYAAADPY 297
Query: 316 HHALAPAPTYGVGAM 330
HH + PA TY +G M
Sbjct: 298 HHTIGPAATYSIGTM 312
>gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]
Length = 451
Score = 460 bits (1183), Expect = e-129
Identities = 257/408 (62%), Positives = 273/408 (66%), Gaps = 81/408 (19%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S T +G+ TQT+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 134 STQAHGEQS--SNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 191
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 192 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 251
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYA--------------------- 225
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA
Sbjct: 252 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 311
Query: 226 --------------VPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGG 270
VPGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY G
Sbjct: 312 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPG 370
Query: 271 VVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALAPA 322
VVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALAPA
Sbjct: 371 VVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALAPA 429
Query: 323 PTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
+YGVGA+ AS+YRGGY+RFAPY
Sbjct: 430 ASYGVGAV--------------------------ASLYRGGYSRFAPY 451
>gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]
Length = 376
Score = 454 bits (1169), Expect = e-128
Identities = 255/404 (63%), Positives = 270/404 (66%), Gaps = 78/404 (19%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYA--------------------- 225
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 240
Query: 226 ----------VPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ 274
+PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY GVVYQ
Sbjct: 241 GGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPGVVYQ 299
Query: 275 DGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALAPAPTYG 326
DGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALAPA +YG
Sbjct: 300 DGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALAPAASYG 358
Query: 327 VGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
VGA+ AS+YRGGY+RFAPY
Sbjct: 359 VGAV--------------------------ASLYRGGYSRFAPY 376
>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
Length = 450
Score = 453 bits (1166), Expect = e-127
Identities = 256/408 (62%), Positives = 270/408 (66%), Gaps = 82/408 (20%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYA--------------------- 225
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA
Sbjct: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 310
Query: 226 --------------VPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGG 270
VPGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY G
Sbjct: 311 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPG 369
Query: 271 VVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALAPA 322
VVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALAPA
Sbjct: 370 VVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALAPA 428
Query: 323 PTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
+YGVGA+ AS+YRGGY+RFAPY
Sbjct: 429 ASYGVGAV--------------------------ASLYRGGYSRFAPY 450
>gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]
Length = 380
Score = 453 bits (1166), Expect = e-127
Identities = 256/408 (62%), Positives = 270/408 (66%), Gaps = 82/408 (20%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYA--------------------- 225
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 240
Query: 226 --------------VPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGG 270
VPGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY G
Sbjct: 241 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPG 299
Query: 271 VVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALAPA 322
VVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALAPA
Sbjct: 300 VVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALAPA 358
Query: 323 PTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
+YGVGA+ AS+YRGGY+RFAPY
Sbjct: 359 ASYGVGAV--------------------------ASLYRGGYSRFAPY 380
>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
Length = 367
Score = 353 bits (907), Expect = 1e-97
Identities = 195/300 (65%), Positives = 207/300 (69%), Gaps = 42/300 (14%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S T +G+ TQT+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQS--SNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 121
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 122 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 181
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYA--------------------- 225
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA
Sbjct: 182 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 241
Query: 226 ----------VPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQ 274
+PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY GV Q
Sbjct: 242 GGINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPGVDMQ 300
>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
Length = 370
Score = 346 bits (887), Expect = 2e-95
Identities = 195/304 (64%), Positives = 204/304 (67%), Gaps = 47/304 (15%)
Query: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
Query: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYA--------------------- 225
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 240
Query: 226 --------------VPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGG 270
VPGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY G
Sbjct: 241 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPG 299
Query: 271 VVYQ 274
V Q
Sbjct: 300 VDMQ 303
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 69.3 bits (168), Expect = 5e-12
Identities = 65/239 (27%), Positives = 99/239 (41%), Gaps = 39/239 (16%)
Query: 84 TVSGTATQTDDAAPTDGQPQ-TQPSENTE-----NKSQPKRLHVSNIPFRFRDPDLRQMF 137
T+ G P QP+ T+P E + + S+ ++ V IP + +LR+ F
Sbjct: 74 TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133
Query: 138 GQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195
+FG + +V +I++ ++ +GFGF+TFE+ D+A +H + G+K+EV A R
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAEPRD 192
Query: 196 MTNKKTVNPYTNGWKLNPVVGAVYS---------PEFYAVPGFPYPAATAAAAYRGAHLR 246
++ P + W V A + Y G PA A Y G
Sbjct: 193 SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGY-GPPPA 251
Query: 247 GRGRTVYNTFRAAAPPPPIPAY------GGVVYQDGF---YGADIYGGYAAYRYAQPTP 296
GRG A PPPP +Y GG GF YGA ++ Y P P
Sbjct: 252 GRG--------APPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAP---PQFSFGYGPPPP 299
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 69.3 bits (168), Expect = 5e-12
Identities = 65/239 (27%), Positives = 99/239 (41%), Gaps = 39/239 (16%)
Query: 84 TVSGTATQTDDAAPTDGQPQ-TQPSENTE-----NKSQPKRLHVSNIPFRFRDPDLRQMF 137
T+ G P QP+ T+P E + + S+ ++ V IP + +LR+ F
Sbjct: 74 TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133
Query: 138 GQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195
+FG + +V +I++ ++ +GFGF+TFE+ D+A +H + G+K+EV A R
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAEPRD 192
Query: 196 MTNKKTVNPYTNGWKLNPVVGAVYS---------PEFYAVPGFPYPAATAAAAYRGAHLR 246
++ P + W V A + Y G PA A Y G
Sbjct: 193 SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGY-GPPPA 251
Query: 247 GRGRTVYNTFRAAAPPPPIPAY------GGVVYQDGF---YGADIYGGYAAYRYAQPTP 296
GRG A PPPP +Y GG GF YGA ++ Y P P
Sbjct: 252 GRG--------APPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAP---PQFSFGYGPPPP 299
>gi|37574731 boule isoform 1 [Homo sapiens]
Length = 295
Score = 63.9 bits (154), Expect = 2e-10
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 23/179 (12%)
Query: 83 QTVSGTAT----QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDL 133
+T SG T QTD +P+ P N + + P R+ V I F+ + DL
Sbjct: 2 ETESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDL 61
Query: 134 RQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 192
R+ F Q+G + +V+I+ + G SKG+GFVTFE DA + ++ + +K+ + A
Sbjct: 62 RKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAI 121
Query: 193 AR--VMTNKKTVNPYTNGWKLNPVVGAVY----------SPEFYAVPGFPYPAATAAAA 239
+ V + ++ P L G Y +PE +VP P+P+ + ++
Sbjct: 122 RKQQVGIPRSSIMPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPP-PWPSRSVCSS 179
>gi|14719414 boule isoform 2 [Homo sapiens]
Length = 283
Score = 62.8 bits (151), Expect = 5e-10
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 91 QTDDAAPTDGQPQTQPSENTENKSQ-----PKRLHVSNIPFRFRDPDLRQMFGQFGKILD 145
QTD +P+ P N + + P R+ V I F+ + DLR+ F Q+G + +
Sbjct: 2 QTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKE 61
Query: 146 VEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR--VMTNKKTV 202
V+I+ + G SKG+GFVTFE DA + ++ + +K+ + A + V + ++
Sbjct: 62 VKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSSI 121
Query: 203 NPYTNGWKLNPVVGAVY----------SPEFYAVPGFPYPAATAAAA 239
P L G Y +PE +VP P+P+ + ++
Sbjct: 122 MPAAGTMYLTTSTGYPYTYHNGVAYFHTPEVTSVPP-PWPSRSVCSS 167
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 62.0 bits (149), Expect = 8e-10
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 105 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 164
Q ++ + Q L+V N+ D LR+ F +G I +++ SKGFGFV F
Sbjct: 282 QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFS 341
Query: 165 NSADADRAREKLHGTVVEGRKIEVNNATAR-----VMTNKKTVNPYTNGWKLNPVVGAVY 219
+ +A +A +++G +V + + V A + ++TN+ T NP++G+
Sbjct: 342 SPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQ 401
Query: 220 SPEFYAVPGFPYPAATAA 237
P Y +P P P A AA
Sbjct: 402 QPSSYFLPAMPQPPAQAA 419
Score = 53.5 bits (127), Expect = 3e-07
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 177
++V N+P + L+ +F QFGK+L V+++ + G S+ FGFV FE +A +A ++
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 178 GTVVEGRKIEVNNATARV 195
G V GR + A RV
Sbjct: 253 GKEVSGRLLYAGRAQKRV 270
Score = 48.9 bits (115), Expect = 7e-06
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + + N+ + L F FG IL ++ +E GS+GFGFV FE A +A
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
++G ++ RK+ V + +R
Sbjct: 155 INTMNGMLLNDRKVFVGHFKSR 176
Score = 33.5 bits (75), Expect = 0.31
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
L+V ++ + L + F G IL + + + R S G+ ++ F+ ADA+RA + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 177 HGTVVEGRKIEV 188
+ +++G+ I +
Sbjct: 73 NFEMLKGQPIRI 84
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 59.3 bits (142), Expect = 5e-09
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 75 QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 131
Q AD + + ++G +D G+ +++ E ++ K +++ N D
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 132 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++G + G+ I V
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 191 ATARV 195
A +V
Sbjct: 266 AQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 52.8 bits (125), Expect = 5e-07
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 19/188 (10%)
Query: 112 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 171
++ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348
Query: 172 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN---GWKLNPVVGAVYSPEFYAVPG 228
A +++G +V + + V A + N Y G + P A+ + A G
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALP-ANAILNQFQPAAGG 407
Query: 229 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAA 288
+ PA A +GR Y T A P P + GF G +A
Sbjct: 408 YFVPAVPQA----------QGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMP-----SA 452
Query: 289 YRYAQPTP 296
R + P P
Sbjct: 453 IRQSGPRP 460
Score = 36.6 bits (83), Expect = 0.037
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
L+V ++ + L + F G +L + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 177 HGTVVEGRKIEV 188
+ V++G+ I +
Sbjct: 73 NFDVIKGKPIRI 84
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 59.3 bits (142), Expect = 5e-09
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 75 QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 131
Q AD + + ++G +D G+ +++ E ++ K +++ N D
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 132 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++G + G+ I V
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 191 ATARV 195
A +V
Sbjct: 266 AQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 52.8 bits (125), Expect = 5e-07
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 19/188 (10%)
Query: 112 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 171
++ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348
Query: 172 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN---GWKLNPVVGAVYSPEFYAVPG 228
A +++G +V + + V A + N Y G + P A+ + A G
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALP-ANAILNQFQPAAGG 407
Query: 229 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAA 288
+ PA A +GR Y T A P P + GF G +A
Sbjct: 408 YFVPAVPQA----------QGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMP-----SA 452
Query: 289 YRYAQPTP 296
R + P P
Sbjct: 453 IRQSGPRP 460
Score = 36.6 bits (83), Expect = 0.037
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
L+V ++ + L + F G +L + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 177 HGTVVEGRKIEV 188
+ V++G+ I +
Sbjct: 73 NFDVIKGKPIRI 84
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 59.3 bits (142), Expect = 5e-09
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 75 QSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKR---LHVSNIPFRFRDP 131
Q AD + + ++G +D G+ +++ E ++ K +++ N D
Sbjct: 148 QEAADKAIEKMNGMLL--NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 132 DLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 190
L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++G + G+ I V
Sbjct: 206 SLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265
Query: 191 ATARV 195
A +V
Sbjct: 266 AQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 52.8 bits (125), Expect = 5e-07
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 19/188 (10%)
Query: 112 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 171
++ Q L++ N+ D LR+ F FG I +++ + SKGFGFV F + +A +
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 348
Query: 172 AREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN---GWKLNPVVGAVYSPEFYAVPG 228
A +++G +V + + V A + N Y G + P A+ + A G
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALP-ANAILNQFQPAAGG 407
Query: 229 FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAA 288
+ PA A +GR Y T A P P + GF G +A
Sbjct: 408 YFVPAVPQA----------QGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMP-----SA 452
Query: 289 YRYAQPTP 296
R + P P
Sbjct: 453 IRQSGPRP 460
Score = 36.6 bits (83), Expect = 0.037
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
L+V ++ + L + F G +L + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 177 HGTVVEGRKIEV 188
+ V++G+ I +
Sbjct: 73 NFDVIKGKPIRI 84
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 7e-09
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 100 GQPQTQPSENTENKSQPKR---LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-S 155
GQ +++ E ++ K +++ N D L+ +FG+FG L V+++ +E G S
Sbjct: 171 GQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 230
Query: 156 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195
KGFGFV+FE DA +A ++++G + G++I V A +V
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Score = 55.8 bits (133), Expect = 6e-08
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + V N+ + L FG IL ++ +E GSKG+GFV FE A+RA
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
+K++G ++ GRK+ V +R
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSR 176
Score = 47.4 bits (111), Expect = 2e-05
Identities = 28/101 (27%), Positives = 47/101 (46%)
Query: 105 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 164
Q ++ + Q L+V N+ D LR+ F FG I +++ SKGFGFV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 165 NSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPY 205
+ +A +A +++G +V + + V A + N Y
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 58.5 bits (140), Expect = 9e-09
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 102 PQTQPSENTENKSQPKR---LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSK 156
P + + N++ P L V + + DLR++F ++G I DV I++++ R S+
Sbjct: 100 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159
Query: 157 GFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189
GF FV FEN DA A+E+ +G ++GR+I V+
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 58.5 bits (140), Expect = 9e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 177
+++ N D L+ +FG+FG L V+++ +E G SKGFGFV+FE DA +A ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 178 GTVVEGRKIEVNNATARV 195
G + G++I V A +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270
Score = 57.0 bits (136), Expect = 3e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 113 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 172
KS + + N+ + L F FG IL +++ +E GSKG+GFV FE A+RA
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 173 REKLHGTVVEGRKIEVNNATAR 194
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 49.7 bits (117), Expect = 4e-06
Identities = 48/186 (25%), Positives = 73/186 (39%), Gaps = 31/186 (16%)
Query: 105 QPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 164
Q ++ + Q L+V N+ D LR+ F FG I +++ SKGFGFV F
Sbjct: 282 QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 165 NSADADRAREKLHGTVV-------------EGRKIEVNNATARVMTNKKTV-NPYTNGWK 210
+ +A +A +++G +V E R+ + N + M + + V NP N ++
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQ 401
Query: 211 LNPVVG------------AVYSPEFYAVPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRA 258
P G A Y P P P TA A + + R
Sbjct: 402 PAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPF-----QNMPGAIRP 456
Query: 259 AAPPPP 264
AAP PP
Sbjct: 457 AAPRPP 462
Score = 35.8 bits (81), Expect = 0.063
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 176
L+V ++ + L + F G IL + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 177 HGTVVEGRKIEV 188
+ V++G+ + +
Sbjct: 73 NFDVIKGKPVRI 84
>gi|189181654 deleted in azoospermia [Homo sapiens]
Length = 744
Score = 57.8 bits (138), Expect = 2e-08
Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 34/233 (14%)
Query: 45 HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 97
+P P P++ P L P P H + + +T T+S A TQ+ AA
Sbjct: 297 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 356
Query: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 156
+ G E K P + V I R + ++ FG++G + +V+II N G SK
Sbjct: 357 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 410
Query: 157 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 204
G+GFV+F N D +K+ G+ + G+K+++ A + V VNP
Sbjct: 411 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 466
Query: 205 --YTNGWKLNPVVGAVYSPEFYAVPGFPYPAATAAAAYR-GAHLRGRGRTVYN 254
+ N W+ NP P+ P + A +A + G + G VYN
Sbjct: 467 PQFQNVWR-NPNTETYLQPQITPNPVTQHVQAYSAYPHSPGQVITGCQLLVYN 518
Score = 56.2 bits (134), Expect = 5e-08
Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 33/205 (16%)
Query: 45 HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 97
+P P P++ P L P P H + + +T T+S A TQ+ AA
Sbjct: 132 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 191
Query: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 156
+ G E K P + V I R + ++ FG++G + +V+II N G SK
Sbjct: 192 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 245
Query: 157 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 204
G+GFV+F N D +K+ G+ + G+K+++ A + V VNP
Sbjct: 246 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 301
Query: 205 --YTNGWKLNPVVGAVYSPEFYAVP 227
+ N W+ NP P+ P
Sbjct: 302 PQFQNVWR-NPNTETYLQPQITPNP 325
Score = 52.4 bits (124), Expect = 7e-07
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 79 DTSAQTVSGTA-TQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 137
+T T+S A TQ+ AA + G E K P + V I R + ++ F
Sbjct: 7 ETPNSTISREASTQSSSAAASQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCF 60
Query: 138 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 194
G++G + +V+II N G SKG+GFV+F N D +K+ G+ + G+K+++ A +
Sbjct: 61 GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116
Query: 195 -------VMTNKKTVNP-----YTNGWKLNPVVGAVYSPEFYAVP 227
V VNP + N W+ NP P+ P
Sbjct: 117 QKLCARHVQPRPLVVNPPPPPQFQNVWR-NPNTETYLQPQITPNP 160
>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
Length = 579
Score = 57.8 bits (138), Expect = 2e-08
Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 34/233 (14%)
Query: 45 HPHPAPEYTGQTTVPEHTLNLYP-----PAQTHSEQSP-ADTSAQTVSGTA-TQTDDAAP 97
+P P P++ P L P P H + + +T T+S A TQ+ AA
Sbjct: 132 NPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAA 191
Query: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SK 156
+ G E K P + V I R + ++ FG++G + +V+II N G SK
Sbjct: 192 SQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSK 245
Query: 157 GFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR-------VMTNKKTVNP--- 204
G+GFV+F N D +K+ G+ + G+K+++ A + V VNP
Sbjct: 246 GYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPP 301
Query: 205 --YTNGWKLNPVVGAVYSPEFYAVPGFPYPAATAAAAYR-GAHLRGRGRTVYN 254
+ N W+ NP P+ P + A +A + G + G VYN
Sbjct: 302 PQFQNVWR-NPNTETYLQPQITPNPVTQHVQAYSAYPHSPGQVITGCQLLVYN 353
Score = 52.4 bits (124), Expect = 7e-07
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 79 DTSAQTVSGTA-TQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 137
+T T+S A TQ+ AA + G E K P + V I R + ++ F
Sbjct: 7 ETPNSTISREASTQSSSAAASQGWVLP------EGKIVPNTVFVGGIDARMDETEIGSCF 60
Query: 138 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 194
G++G + +V+II N G SKG+GFV+F N D +K+ G+ + G+K+++ A +
Sbjct: 61 GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116
Query: 195 -------VMTNKKTVNP-----YTNGWKLNPVVGAVYSPEFYAVP 227
V VNP + N W+ NP P+ P
Sbjct: 117 QKLCARHVQPRPLVVNPPPPPQFQNVWR-NPNTETYLQPQITPNP 160
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 57.8 bits (138), Expect = 2e-08
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 33 PQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQT 92
P+ G + P HP P + G P +PP Q P S
Sbjct: 216 PKPGGGPGLSTPGGHPKPPHRGGGE-PRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISD 274
Query: 93 DDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 152
+ + +P E T +Q RL V N+P + + +++F ++G+ E+ N+
Sbjct: 275 SEGFKANLSLLRRPGEKTY--TQRCRLFVGNLPADITEDEFKRLFAKYGE--PGEVFINK 330
Query: 153 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 207
KGFGF+ E+ A A+ A+ +L T + GR++ V AT + + ++PY +
Sbjct: 331 --GKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVS 383
Score = 28.9 bits (63), Expect = 7.7
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREK 175
L V N+ + L + F QFG I +I ++RG S G G V F + A +A E+
Sbjct: 373 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 430
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 116 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 173
P RL+V ++ F + LR +F FG+I ++++ + E G SKG+GF+TF +S A +A
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 174 EKLHGTVVEGRKIEVNNATAR 194
E+L+G + GR ++V + T R
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 116 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAR 173
P RL+V ++ F + LR +F FG+I ++++ + E G SKG+GF+TF +S A +A
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 174 EKLHGTVVEGRKIEVNNATAR 194
E+L+G + GR ++V + T R
Sbjct: 309 EQLNGFELAGRPMKVGHVTER 329
>gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens]
Length = 236
Score = 56.2 bits (134), Expect = 5e-08
Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 16/205 (7%)
Query: 110 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSA 167
T+ + ++ V +P+ D LR+ F FG+I + +I + + S+G+GFVT + A
Sbjct: 4 TQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 168 DADRAREKLHGTVVEGRKIEVN----NATARVMT-----NKKTVNPYTNGWKLNPVVGAV 218
A+RA K +++GRK VN A R+M + ++P V
Sbjct: 64 AAERAC-KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYV 122
Query: 219 YSPEFYAVPG--FPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDG 276
Y P+ + PG P+ TAAAA ++ G AAA AY Y
Sbjct: 123 Y-PQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAAAAAAAYDQYPYAAS 181
Query: 277 FYGADIYGGYAAYRYAQPTPATAAA 301
A Y Y YA P TAAA
Sbjct: 182 PAAAG-YVTAGGYGYAVQQPITAAA 205
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,672,382
Number of Sequences: 37866
Number of extensions: 930466
Number of successful extensions: 4564
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 3611
Number of HSP's gapped (non-prelim): 995
length of query: 370
length of database: 18,247,518
effective HSP length: 104
effective length of query: 266
effective length of database: 14,309,454
effective search space: 3806314764
effective search space used: 3806314764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.