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Search of human proteins with 214832074
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 482 e-136
gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens] 342 2e-94
gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens] 342 2e-94
gi|4505005 LIM domain only 1 [Homo sapiens] 170 1e-42
gi|21361802 LIM domain only 3 [Homo sapiens] 167 7e-42
gi|47778935 LIM domain only 3 [Homo sapiens] 167 7e-42
gi|5803072 LIM domain only 4 [Homo sapiens] 132 2e-31
gi|15375314 LIM homeobox protein 4 [Homo sapiens] 98 7e-21
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 97 1e-20
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 97 1e-20
gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens] 97 1e-20
gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens] 97 1e-20
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 96 3e-20
gi|50083287 LIM homeobox 8 [Homo sapiens] 95 6e-20
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 92 3e-19
gi|21956641 ISL LIM homeobox 2 [Homo sapiens] 92 3e-19
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens] 89 2e-18
gi|115387114 islet-1 [Homo sapiens] 89 2e-18
gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens] 89 3e-18
gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens] 89 3e-18
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 87 1e-17
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 86 2e-17
gi|194272207 actin binding LIM protein family, member 2 isoform ... 75 6e-14
gi|153792514 actin binding LIM protein family, member 2 isoform ... 75 6e-14
gi|194272204 actin binding LIM protein family, member 2 isoform ... 75 6e-14
gi|194272202 actin binding LIM protein family, member 2 isoform ... 75 6e-14
gi|194272200 actin binding LIM protein family, member 2 isoform ... 75 6e-14
gi|194272198 actin binding LIM protein family, member 2 isoform ... 75 6e-14
gi|194272196 actin binding LIM protein family, member 2 isoform ... 75 6e-14
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 72 5e-13
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 482 bits (1241), Expect = e-136
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MEGSAVTVLERGGASSPAERRSKRRRRSGGDGGGGGGARAPEGVRAPAAGQPRATKGAPP 60
MEGSAVTVLERGGASSPAERRSKRRRRSGGDGGGGGGARAPEGVRAPAAGQPRATKGAPP
Sbjct: 1 MEGSAVTVLERGGASSPAERRSKRRRRSGGDGGGGGGARAPEGVRAPAAGQPRATKGAPP 60
Query: 61 PPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWH 120
PPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWH
Sbjct: 61 PPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWH 120
Query: 121 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVK 180
EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVK
Sbjct: 121 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVK 180
Query: 181 DKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 227
DKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
Sbjct: 181 DKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 227
>gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 342 bits (876), Expect = 2e-94
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 70 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 129
MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
Sbjct: 1 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 130 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 189
GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 190 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 227
KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
Sbjct: 121 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 158
>gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 342 bits (876), Expect = 2e-94
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 70 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 129
MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
Sbjct: 1 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 130 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 189
GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 190 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 227
KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
Sbjct: 121 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 158
>gi|4505005 LIM domain only 1 [Homo sapiens]
Length = 156
Score = 170 bits (430), Expect = 1e-42
Identities = 75/127 (59%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
Query: 99 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 158
C GC + I DRY LKA+D+YWHEDCL C C CRLGEVG LY K LCRRDYLRLFG
Sbjct: 24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 83
Query: 159 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 218
G CA+C K I A+EM MR +D VYHL+CF C C + FCVGD++ L N+ I+C+ D Y
Sbjct: 84 TTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMD-Y 142
Query: 219 EWTKING 225
E ++NG
Sbjct: 143 EEGQLNG 149
>gi|21361802 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 167 bits (423), Expect = 7e-42
Identities = 73/121 (60%), Positives = 85/121 (70%)
Query: 99 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 158
C GC + I DRY LKA+D+YWHEDCL C C CRLGEVG LY K LCRRDYLRLFG
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 72
Query: 159 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 218
G CA+C K I A+EM MR KD VYHL+CF C C + FCVGD++ L N+ I+C+ D
Sbjct: 73 VTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
Query: 219 E 219
E
Sbjct: 133 E 133
>gi|47778935 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 167 bits (423), Expect = 7e-42
Identities = 73/121 (60%), Positives = 85/121 (70%)
Query: 99 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 158
C GC + I DRY LKA+D+YWHEDCL C C CRLGEVG LY K LCRRDYLRLFG
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 72
Query: 159 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 218
G CA+C K I A+EM MR KD VYHL+CF C C + FCVGD++ L N+ I+C+ D
Sbjct: 73 VTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
Query: 219 E 219
E
Sbjct: 133 E 133
>gi|5803072 LIM domain only 4 [Homo sapiens]
Length = 165
Score = 132 bits (333), Expect = 2e-31
Identities = 55/118 (46%), Positives = 71/118 (60%)
Query: 99 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 158
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
Query: 159 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 216
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|15375314 LIM homeobox protein 4 [Homo sapiens]
Length = 390
Score = 97.8 bits (242), Expect = 7e-21
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 88 EVLQIPPSLLT-CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGR 146
E+L +P + C GC Q+I D++ LK +D++WH CL C C +L + R + + G
Sbjct: 18 EMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGS 74
Query: 147 KLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YL 205
C+ D+ + FG C +C + I ++ + +D VYHL CF C C + GD YL
Sbjct: 75 VYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYL 132
Query: 206 LINSDIVCEQDIYEWTKIN 224
+ + +VC++D YE K N
Sbjct: 133 MEDGRLVCKED-YETAKQN 150
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 96.7 bits (239), Expect = 1e-20
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 99 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 158
C GC Q+I DR+ LKA+D++WH CL C C L E R + + C+ D+ + FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 87
Query: 159 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCEQDI 217
CA+C I ++ R +D VYHL CF C C++ GD YL+ +S +VC+ D
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD- 144
Query: 218 YEWTK 222
YE K
Sbjct: 145 YETAK 149
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 96.7 bits (239), Expect = 1e-20
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 99 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 158
C GC Q+I DR+ LKA+D++WH CL C C L E R + + C+ D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 159 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCEQDI 217
CA+C I ++ R +D VYHL CF C C++ GD YL+ +S +VC+ D
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD- 149
Query: 218 YEWTK 222
YE K
Sbjct: 150 YETAK 154
>gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens]
Length = 397
Score = 96.7 bits (239), Expect = 1e-20
Identities = 50/122 (40%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 93 PPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLG-EVGRRLYYKLGRKLCRR 151
P C GC I DRY+L A+D+ WH CL C C C+L E + K G C+
Sbjct: 65 PEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKE 122
Query: 152 DYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 211
DY R F CA C I A EM MR +D VYHL CF C+ C K GD + + +S +
Sbjct: 123 DYYRRFSVQR-CARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLV 181
Query: 212 VC 213
C
Sbjct: 182 YC 183
>gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens]
Length = 388
Score = 96.7 bits (239), Expect = 1e-20
Identities = 50/122 (40%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 93 PPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLG-EVGRRLYYKLGRKLCRR 151
P C GC I DRY+L A+D+ WH CL C C C+L E + K G C+
Sbjct: 56 PEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKE 113
Query: 152 DYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 211
DY R F CA C I A EM MR +D VYHL CF C+ C K GD + + +S +
Sbjct: 114 DYYRRFSVQR-CARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLV 172
Query: 212 VC 213
C
Sbjct: 173 YC 174
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 95.9 bits (237), Expect = 3e-20
Identities = 54/145 (37%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 70 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 129
+SSAI+R + + + C GC I DRY+L A+D+ WH CL C C
Sbjct: 29 ISSAIDRGDTETTMPSISS-----DRAALCAGCGGKISDRYYLLAVDKQWHMRCLKC--C 81
Query: 130 GCRLG-EVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLEC 188
C+L E + K G C+ DY R F CA C I A EM MR +D VYHL C
Sbjct: 82 ECKLNLESELTCFSKDGSIYCKEDYYRRFSVQR-CARCHLGISASEMVMRARDLVYHLNC 140
Query: 189 FKCAACQKHFCVGDRYLLINSDIVC 213
F C C K GD + + +S + C
Sbjct: 141 FTCTTCNKMLTTGDHFGMKDSLVYC 165
>gi|50083287 LIM homeobox 8 [Homo sapiens]
Length = 356
Score = 94.7 bits (234), Expect = 6e-20
Identities = 55/182 (30%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 32 GGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQ 91
G G G +PEG A + + AP P + P S S +
Sbjct: 29 GAGEEGLVSPEG----AGDEDSCSSSAPLSPSSSPRSMASGS-----------------G 67
Query: 92 IPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRR 151
PP C C I D+Y LK D WH CLSC +C LG Y K C+
Sbjct: 68 CPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKL 126
Query: 152 DYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 211
DY R +G C+ C + I + + R K VYHL CF C +C++ G+ + L+ +
Sbjct: 127 DYFRRYGTR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKV 184
Query: 212 VC 213
+C
Sbjct: 185 LC 186
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 92.4 bits (228), Expect = 3e-19
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
++ C GC++ I DR+ L +D+ WH C+ C C C L E + + + G+ C+ D+ R
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFR 57
Query: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCE 214
FG CA C + I ++ R + KV+HL CF C C K G+ Y++ + VC+
Sbjct: 58 CFGTK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK 115
Query: 215 QD 216
+D
Sbjct: 116 ED 117
>gi|21956641 ISL LIM homeobox 2 [Homo sapiens]
Length = 359
Score = 92.4 bits (228), Expect = 3e-19
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 94 PSLLTCGGCQQNIGDRYFLKAI-DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 152
P C GC I D++ L+ D WH CL C C L E + + G+ C+RD
Sbjct: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCT-CFVRDGKTYCKRD 80
Query: 153 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIV 212
Y+RLFG CA C + ++ MR +D VYH+ECF+C+ C + GD + L +++
Sbjct: 81 YVRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELL 138
Query: 213 CEQD 216
C D
Sbjct: 139 CRAD 142
>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
Length = 372
Score = 89.4 bits (220), Expect = 2e-18
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 94 PSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 153
P C GCQ+ I DR+ ++ + WHE+CL C C L Y++ + C++DY
Sbjct: 28 PHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTT---SCYFRDRKLYCKQDY 84
Query: 154 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC 213
+LF C+ C ++I E MR + VYHL CF C C++ GD ++L ++C
Sbjct: 85 QQLFAAK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLC 142
Query: 214 EQDIYEWTK 222
+ D YE K
Sbjct: 143 KGD-YEKEK 150
>gi|115387114 islet-1 [Homo sapiens]
Length = 349
Score = 89.4 bits (220), Expect = 2e-18
Identities = 44/119 (36%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 99 CGGCQQNIGDRYFLKAI-DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 157
C GC I D+Y L+ D WH CL C C L E + + G+ C+RDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 158 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 216
G CA C + MR + KVYH+ECF+C AC + GD + L + C D
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRAD 132
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 162 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 216
LC C +I + D +H C KCA C ++ + + C++D
Sbjct: 16 LCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 70
>gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]
Length = 377
Score = 89.0 bits (219), Expect = 3e-18
Identities = 58/201 (28%), Positives = 79/201 (39%), Gaps = 31/201 (15%)
Query: 41 PEGVRAPAAGQPRATKGAPPP-----------PGTPPPSPMSSAIERKS--LDPSEEPVD 87
PEG R PA G P + P GT PP+ S E + LD E
Sbjct: 13 PEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQAS 72
Query: 88 EVLQIPPSLLT---------------CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCR 132
PS+ + C C I DRY LK + WH CL C +C
Sbjct: 73 PCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTS 132
Query: 133 LGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCA 192
L + Y K C+ DY FG CA C ++I A + R + YHL CF C
Sbjct: 133 LRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACF 189
Query: 193 ACQKHFCVGDRYLLINSDIVC 213
+C++ G+ + L+ ++C
Sbjct: 190 SCKRQLSTGEEFGLVEEKVLC 210
Score = 33.5 bits (75), Expect = 0.15
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 162 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 218
+C+SC I + ++V + ++H+ C +C+ C+ + + N +I C+ D +
Sbjct: 98 ICSSCGLEILDRYL-LKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYF 153
>gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]
Length = 392
Score = 89.0 bits (219), Expect = 3e-18
Identities = 58/201 (28%), Positives = 79/201 (39%), Gaps = 31/201 (15%)
Query: 41 PEGVRAPAAGQPRATKGAPPP-----------PGTPPPSPMSSAIERKS--LDPSEEPVD 87
PEG R PA G P + P GT PP+ S E + LD E
Sbjct: 13 PEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQAS 72
Query: 88 EVLQIPPSLLT---------------CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCR 132
PS+ + C C I DRY LK + WH CL C +C
Sbjct: 73 PCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTS 132
Query: 133 LGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCA 192
L + Y K C+ DY FG CA C ++I A + R + YHL CF C
Sbjct: 133 LRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACF 189
Query: 193 ACQKHFCVGDRYLLINSDIVC 213
+C++ G+ + L+ ++C
Sbjct: 190 SCKRQLSTGEEFGLVEEKVLC 210
Score = 33.5 bits (75), Expect = 0.15
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 162 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 218
+C+SC I + ++V + ++H+ C +C+ C+ + + N +I C+ D +
Sbjct: 98 ICSSCGLEILDRYL-LKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYF 153
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 87.0 bits (214), Expect = 1e-17
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
++ C GC++ I DR+ L +D+ WH C+ C C L E + + + G+ C+ D+ R
Sbjct: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE---KCFSREGKLYCKNDFFR 58
Query: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCE 214
FG CA C + I ++ + + KV+HL CF C C K G+ Y++ + VC+
Sbjct: 59 RFGTK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK 116
Query: 215 QD 216
D
Sbjct: 117 DD 118
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 86.3 bits (212), Expect = 2e-17
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 99 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 158
C GCQ+ I DR+ L+ D +WHE C+ C C L +Y+ + C+ DY +LF
Sbjct: 35 CEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETT---CFYRDKKLYCKYDYEKLFA 91
Query: 159 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 216
C C + I E MR + VYHL CF C C++ GD ++L ++C+ D
Sbjct: 92 VK--CGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147
>gi|194272207 actin binding LIM protein family, member 2 isoform 7
[Homo sapiens]
Length = 470
Score = 74.7 bits (182), Expect = 6e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 72 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 131
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 132 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 191
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 192 AACQKHFCVGDRYLLINSDIVCEQ 215
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 3e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 211
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|153792514 actin binding LIM protein family, member 2 isoform 6
[Homo sapiens]
Length = 521
Score = 74.7 bits (182), Expect = 6e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 72 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 131
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 132 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 191
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 192 AACQKHFCVGDRYLLINSDIVCEQ 215
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 3e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 211
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|194272204 actin binding LIM protein family, member 2 isoform 5
[Homo sapiens]
Length = 531
Score = 74.7 bits (182), Expect = 6e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 72 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 131
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 132 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 191
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 192 AACQKHFCVGDRYLLINSDIVCEQ 215
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 3e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 211
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|194272202 actin binding LIM protein family, member 2 isoform 4
[Homo sapiens]
Length = 559
Score = 74.7 bits (182), Expect = 6e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 72 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 131
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 132 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 191
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 192 AACQKHFCVGDRYLLINSDIVCEQ 215
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 3e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 211
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|194272200 actin binding LIM protein family, member 2 isoform 3
[Homo sapiens]
Length = 572
Score = 74.7 bits (182), Expect = 6e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 72 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 131
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 132 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 191
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 192 AACQKHFCVGDRYLLINSDIVCEQ 215
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 3e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 211
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|194272198 actin binding LIM protein family, member 2 isoform 2
[Homo sapiens]
Length = 611
Score = 74.7 bits (182), Expect = 6e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 72 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 131
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 132 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 191
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 192 AACQKHFCVGDRYLLINSDIVCEQ 215
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 3e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 211
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|194272196 actin binding LIM protein family, member 2 isoform 1
[Homo sapiens]
Length = 645
Score = 74.7 bits (182), Expect = 6e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 72 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 131
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 132 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 191
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 192 AACQKHFCVGDRYLLINSDIVCEQ 215
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 3e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 96 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 155
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 156 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 211
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 71.6 bits (174), Expect = 5e-13
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 64 TPPPSPMSSAIERKSLDPSE-EPVDEVLQIPP--------SLLTCGGCQQNIGDRYF-LK 113
+PPP P + E S+ P P++E L PP S C C + + R ++
Sbjct: 139 SPPPPPPQAPAEGPSVQPGPLRPMEEELPPPPAEPVEKGASTDICAFCHKTVSPRELAVE 198
Query: 114 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGL--CASCDKRIR 171
A+ + +H C +C C +L G+ Y K GR LC Y QD L C C + +R
Sbjct: 199 AMKRQYHAQCFTCRTCRRQLA--GQSFYQKDGRPLCEPCY-----QDTLERCGKCGEVVR 251
Query: 172 AYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINS--DIVCEQDIYEWTK 222
+ +R + +H CF C C + C+GD + S ++ C D Y + K
Sbjct: 252 --DHIIRALGQAFHPSCFTCVTCAR--CIGDESFALGSQNEVYCLDDFYRYEK 300
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,802,625
Number of Sequences: 37866
Number of extensions: 783469
Number of successful extensions: 19200
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 889
Number of HSP's that attempted gapping in prelim test: 11536
Number of HSP's gapped (non-prelim): 6598
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.