Guide to the Human Genome
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Name: LOC100291358 Sequence: fasta or formatted (212aa) NCBI GI: 239750423
Description:

PREDICTED: hypothetical protein XP_002347390

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.0         36           3
 C cysteine            3.8          8           2
 D aspartate           0.9          2           1
 E glutamate           6.1         13           2
 F phenylalanine       0.5          1           1
 G glycine            15.6         33           2
 H histidine           1.4          3           1
 I isoleucine          0.5          1           1
 K lysine              2.4          5           1
 L leucine             6.1         13           2
 M methionine          1.4          3           1
 N asparagine          1.4          3           1
 P proline             8.0         17           2
 Q glutamine           5.7         12           1
 R arginine           11.8         25           3
 S serine              7.5         16           3
 T threonine           2.4          5           1
 V valine              4.7         10           2
 W tryptophan          1.9          4           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347390 
LOC100293922          1.000   PREDICTED: hypothetical protein 
LOC100287812          0.622   PREDICTED: hypothetical protein XP_002343253 
NKX1-1                0.048   PREDICTED: NK1 homeobox 1 
NKX1-1                0.048   PREDICTED: NK1 homeobox 1 
NKX1-1                0.048   PREDICTED: HPX-153 homeobox 
LOC100292370          0.041   PREDICTED: hypothetical protein 
LOC100290265          0.041   PREDICTED: hypothetical protein XP_002346787 
MBD1                  0.036   methyl-CpG binding domain protein 1 isoform 2 
NKX1-2                0.034   NK1 homeobox 2 
NKX1-2                0.034   PREDICTED: NK1 homeobox 2 
LOC100292745          0.034   PREDICTED: hypothetical protein 
NKX1-2                0.034   PREDICTED: NK1 homeobox 2 
LOC100290074          0.034   PREDICTED: hypothetical protein XP_002346855 
NKX1-2                0.034   PREDICTED: NK1 homeobox 2 
HMX1                  0.034   homeo box (H6 family) 1 
ZSWIM6                0.034   zinc finger, SWIM-type containing 6 
LOC100287034          0.029   PREDICTED: hypothetical protein XP_002342693 
AGAP2                 0.029   centaurin, gamma 1 isoform PIKE-L 
ANKRD56               0.029   ankyrin repeat domain 56 
SBF1                  0.029   SET binding factor 1 
MAGI2                 0.029   membrane associated guanylate kinase, WW and PDZ dom...
LOC100292017          0.027   PREDICTED: hypothetical protein XP_002344620 
SHE                   0.027   Src homology 2 domain containing E 
ZBP1                  0.027   Z-DNA binding protein 1 isoform c 
ZBP1                  0.027   Z-DNA binding protein 1 isoform b 
ZBP1                  0.027   Z-DNA binding protein 1 isoform a 
HOXD9                 0.027   homeobox D9 
DGKI                  0.027   diacylglycerol kinase, iota 
AGAP3                 0.024   centaurin, gamma 3 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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