Guide to the Human Genome
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Name: DCTN1 Sequence: fasta or formatted (1144aa) NCBI GI: 13259508
Description:

dynactin 1 isoform 2

Referenced in:

Dynein and Dynactin

Other entries for this name:
alt prot [1278aa] dynactin 1 isoform 1
alt prot [1253aa] dynactin 1 isoform 3
alt prot [1139aa] dynactin 1 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7        122           5
 C cysteine            1.0         12           1
 D aspartate           4.5         52           2
 E glutamate          11.8        135           3
 F phenylalanine       1.7         19           1
 G glycine             4.3         49           2
 H histidine           2.0         23           1
 I isoleucine          3.3         38           2
 K lysine              6.9         79           2
 L leucine            12.7        145           3
 M methionine          2.6         30           2
 N asparagine          1.7         19           1
 P proline             4.8         55           3
 Q glutamine           7.3         83           3
 R arginine            6.1         70           3
 S serine              7.0         80           3
 T threonine           5.2         60           3
 V valine              4.8         55           2
 W tryptophan          0.2          2           1
 Y tyrosine            1.4         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dynactin 1 isoform 2 
DCTN1                 0.997   dynactin 1 isoform 1 
DCTN1                 0.993   dynactin 1 isoform 4 
DCTN1                 0.978   dynactin 1 isoform 3 
MYH6                  0.037   myosin heavy chain 6 
MYH7                  0.034   myosin, heavy chain 7, cardiac muscle, beta 
CROCC                 0.034   ciliary rootlet coiled-coil 
NUMA1                 0.033   nuclear mitotic apparatus protein 1 
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH9                  0.032   myosin, heavy polypeptide 9, non-muscle 
MYH2                  0.032   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.032   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH13                 0.032   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH10                 0.032   myosin, heavy polypeptide 10, non-muscle 
CGN                   0.032   cingulin 
LOC440243             0.031   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283685             0.030   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH1                  0.030   myosin, heavy chain 1, skeletal muscle, adult [Homo...
PLEC1                 0.030   plectin 1 isoform 11 
PLEC1                 0.030   plectin 1 isoform 10 
PLEC1                 0.030   plectin 1 isoform 8 
PLEC1                 0.030   plectin 1 isoform 7 
PLEC1                 0.030   plectin 1 isoform 6 
PLEC1                 0.030   plectin 1 isoform 3 
PLEC1                 0.030   plectin 1 isoform 2 
PLEC1                 0.030   plectin 1 isoform 1 
LOC283767             0.030   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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