Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC146429 Sequence: fasta or formatted (495aa) NCBI GI: 239756672
Description:

PREDICTED: hypothetical protein LOC146429

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [558aa] PREDICTED: hypothetical protein LOC146429 isoform 1
alt prot [560aa] PREDICTED: hypothetical protein LOC146429 isoform 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         62           3
 C cysteine            1.8          9           1
 D aspartate           2.2         11           1
 E glutamate           3.2         16           2
 F phenylalanine       3.6         18           2
 G glycine            10.7         53           3
 H histidine           1.8          9           1
 I isoleucine          1.4          7           1
 K lysine              0.4          2           1
 L leucine            20.6        102           4
 M methionine          0.8          4           1
 N asparagine          1.0          5           1
 P proline             7.7         38           2
 Q glutamine           3.0         15           2
 R arginine            7.9         39           2
 S serine              7.9         39           2
 T threonine           4.0         20           2
 V valine              6.1         30           2
 W tryptophan          2.4         12           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC146429 
LOC146429             0.921   PREDICTED: hypothetical protein LOC146429 isoform 1...
LOC146429             0.911   PREDICTED: hypothetical protein LOC146429 isoform 6...
SLC22A17              0.176   solute carrier family 22, member 17 isoform b 
SLC22A17              0.157   solute carrier family 22, member 17 isoform a 
SLC22A23              0.134   solute carrier family 22, member 23 isoform a [Homo...
SLC22A5               0.105   solute carrier family 22 member 5 
SLC22A8               0.099   solute carrier family 22 member 8 
SLC22A7               0.092   solute carrier family 22 member 7 isoform b 
SLC22A7               0.092   solute carrier family 22 member 7 isoform a 
SLC22A4               0.090   solute carrier family 22 member 4 
SLC22A3               0.086   solute carrier family 22 member 3 
SLC22A2               0.084   solute carrier family 22 member 2 
SLC22A1               0.080   solute carrier family 22 member 1 isoform a 
SLC22A23              0.079   solute carrier family 22, member 23 isoform b 
SLC22A12              0.075   urate anion exchanger 1 isoform a 
SLC22A6               0.071   solute carrier family 22 member 6 isoform c 
SLC22A6               0.069   solute carrier family 22 member 6 isoform d 
SLC22A6               0.069   solute carrier family 22 member 6 isoform b 
SLC22A6               0.069   solute carrier family 22 member 6 isoform a 
SLC22A1               0.065   solute carrier family 22 member 1 isoform b 
SLC22A11              0.062   solute carrier family 22 member 11 
SLC22A13              0.059   solute carrier family 22 (organic anion transporter...
SLC22A20              0.055   solute carrier family 22, member 20 
SLC22A16              0.052   solute carrier family 22, member 16 
SLC22A10              0.050   solute carrier family 22, member 10 
SLC22A15              0.048   solute carrier family 22, member 15 
SLC22A14              0.046   organic cation transporter like 4 
SLC22A24              0.039   solute carrier family 22, member 24 
SLC22A12              0.033   urate anion exchanger 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press