Guide to the Human Genome
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Name: SLC22A20 Sequence: fasta or formatted (555aa) NCBI GI: 238814326
Description:

solute carrier family 22, member 20

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         60           2
 C cysteine            2.9         16           2
 D aspartate           1.8         10           1
 E glutamate           4.5         25           2
 F phenylalanine       5.0         28           2
 G glycine             7.6         42           2
 H histidine           1.4          8           2
 I isoleucine          4.9         27           2
 K lysine              2.7         15           2
 L leucine            13.3         74           4
 M methionine          3.4         19           1
 N asparagine          2.7         15           1
 P proline             4.5         25           2
 Q glutamine           3.4         19           2
 R arginine            4.9         27           2
 S serine              7.9         44           2
 T threonine           6.5         36           2
 V valine              6.8         38           2
 W tryptophan          2.0         11           2
 Y tyrosine            2.9         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 22, member 20 
SLC22A6               0.442   solute carrier family 22 member 6 isoform b 
SLC22A6               0.440   solute carrier family 22 member 6 isoform a 
SLC22A8               0.428   solute carrier family 22 member 8 
SLC22A6               0.399   solute carrier family 22 member 6 isoform d 
SLC22A6               0.399   solute carrier family 22 member 6 isoform c 
SLC22A12              0.364   urate anion exchanger 1 isoform a 
SLC22A11              0.358   solute carrier family 22 member 11 
SLC22A10              0.342   solute carrier family 22, member 10 
SLC22A24              0.311   solute carrier family 22, member 24 
SLC22A25              0.305   putative UST1-like organic anion transporter 
SLC22A13              0.299   solute carrier family 22 (organic anion transporter...
SLC22A7               0.298   solute carrier family 22 member 7 isoform a 
SLC22A9               0.294   solute carrier family 22 (organic anion/cation trans...
SLC22A7               0.293   solute carrier family 22 member 7 isoform b 
SLC22A3               0.216   solute carrier family 22 member 3 
SLC22A5               0.200   solute carrier family 22 member 5 
SLC22A12              0.190   urate anion exchanger 1 isoform b 
SLC22A2               0.188   solute carrier family 22 member 2 
SLC22A1               0.180   solute carrier family 22 member 1 isoform a 
SLC22A16              0.179   solute carrier family 22, member 16 
SLC22A4               0.179   solute carrier family 22 member 4 
SLC22A14              0.175   organic cation transporter like 4 
SLC22A15              0.167   solute carrier family 22, member 15 
SLC22A1               0.155   solute carrier family 22 member 1 isoform b 
SVOP                  0.096   SV2 related protein 
SLC22A23              0.094   solute carrier family 22, member 23 isoform a [Homo...
SLC22A17              0.080   solute carrier family 22, member 17 isoform b 
LOC146429             0.079   PREDICTED: hypothetical protein LOC146429 isoform 1...
LOC146429             0.078   PREDICTED: hypothetical protein LOC146429 isoform 6...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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