Guide to the Human Genome
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Name: SLC22A1 Sequence: fasta or formatted (506aa) NCBI GI: 23510410
Description:

solute carrier family 22 member 1 isoform b

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [554aa] solute carrier family 22 member 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         41           2
 C cysteine            3.0         15           1
 D aspartate           4.3         22           2
 E glutamate           3.8         19           2
 F phenylalanine       5.3         27           1
 G glycine             8.3         42           2
 H histidine           1.8          9           2
 I isoleucine          5.1         26           3
 K lysine              2.8         14           1
 L leucine            13.6         69           2
 M methionine          3.4         17           1
 N asparagine          2.8         14           1
 P proline             5.3         27           2
 Q glutamine           3.6         18           1
 R arginine            5.1         26           2
 S serine              7.1         36           2
 T threonine           4.5         23           1
 V valine              6.3         32           1
 W tryptophan          2.6         13           1
 Y tyrosine            3.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 22 member 1 isoform b 
SLC22A1               0.908   solute carrier family 22 member 1 isoform a 
SLC22A2               0.665   solute carrier family 22 member 2 
SLC22A3               0.434   solute carrier family 22 member 3 
SLC22A5               0.210   solute carrier family 22 member 5 
SLC22A8               0.208   solute carrier family 22 member 8 
SLC22A13              0.193   solute carrier family 22 (organic anion transporter...
SLC22A4               0.187   solute carrier family 22 member 4 
SLC22A6               0.184   solute carrier family 22 member 6 isoform c 
SLC22A6               0.182   solute carrier family 22 member 6 isoform d 
SLC22A6               0.182   solute carrier family 22 member 6 isoform b 
SLC22A6               0.182   solute carrier family 22 member 6 isoform a 
SLC22A16              0.174   solute carrier family 22, member 16 
SLC22A20              0.166   solute carrier family 22, member 20 
SLC22A12              0.165   urate anion exchanger 1 isoform a 
SLC22A11              0.153   solute carrier family 22 member 11 
SLC22A7               0.153   solute carrier family 22 member 7 isoform a 
SLC22A24              0.149   solute carrier family 22, member 24 
SLC22A7               0.148   solute carrier family 22 member 7 isoform b 
SLC22A14              0.147   organic cation transporter like 4 
SLC22A15              0.137   solute carrier family 22, member 15 
SLC22A10              0.132   solute carrier family 22, member 10 
SLC22A25              0.111   putative UST1-like organic anion transporter 
SLC22A9               0.107   solute carrier family 22 (organic anion/cation trans...
SVOP                  0.097   SV2 related protein 
SLC22A12              0.084   urate anion exchanger 1 isoform b 
LOC146429             0.082   PREDICTED: hypothetical protein LOC146429 isoform 6...
LOC146429             0.080   PREDICTED: hypothetical protein LOC146429 isoform 1...
SLC22A17              0.077   solute carrier family 22, member 17 isoform b 
SLC22A23              0.073   solute carrier family 22, member 23 isoform a [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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